当前解析结果
SmilChr07G003614| 统一新 Gene ID | SmilChr07G003614 |
|---|---|
| 名称 | SmilChr07G003614 |
| 描述 | uncharacterized mitochondrial protein AtMg00810-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 42443647 - 42444849 / - |
| NCBI Gene ID | LOC130994241 |
|---|---|
| GeneID | 130994241 |
| locus_tag | - |
| NCBI Name | LOC130994241 |
| 原始查询 | SmilChr07G003614 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os11g0656500; species=rice; confidence=low |
| 产物 | hit=Os11g0656500; species=rice; confidence=low |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=30.4; qcov=0.848; evalue=7.85e-35; confidence=low |
| Rice | Os11g0656500- identity=33.5; qcov=1.22; evalue=5.48e-54; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994241 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057775263.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057775263.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057775263.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057775263.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057775263.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:42443681 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B11,B114,B17,B73,C30 |
Chr7:42443689 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B11,B53,C3 |
Chr7:42443696 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr7:42443711 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B136,C57 |
Chr7:42443725 |
A |
ACT |
2bp_insertion | stop_gained,frameshift_variant | 1 | B122 |
Chr7:42443725 |
A |
ACT |
2bp_insertion | CDS_variant | 1 | B122 |
Chr7:42443736 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | D9 |
Chr7:42443736 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
Chr7:42443739 |
T |
TC |
1bp_insertion | frameshift_variant | 25 | A13,A14,A18,A8,B118,B121,B122,B25,B3,B32,B61,B65,B81,B88,C11,C12,C23,C42,C50,C51,C64,C66,C69,C83,D2 |
Chr7:42443746 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr7:42443755 |
C |
CT |
1bp_insertion | frameshift_variant | 8 | A7,B127,C16,C33,C34,C37,C59,D1 |
Chr7:42443757 |
C |
CT |
1bp_insertion | frameshift_variant | 8 | A7,B127,C16,C33,C34,C37,C59,D1 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。