Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003636`

染色体: Chr07 坐标: 43051755-43056440 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003636`
名称	SmilChr07G003636
描述	homeobox-leucine zipper protein HDG5
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	43051755 - 43056440 / `+`

ID 对照

NCBI Gene ID	`LOC130996241`
GeneID	`130996241`
locus_tag	`-`
NCBI Name	`LOC130996241`
原始查询	`SmilChr07G003636`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	homeobox-leucine zipper protein HDG5
产物	homeobox-leucine zipper protein HDG5
Arabidopsis	`AT5G46880` (HB-7) homeobox-7 [Source:NCBI gene (formerly Entrezgene);Acc:834733] identity=57.4; qcov=1.03; evalue=0; confidence=high
Rice	`Os10g0575600` (Roc3(t)) - identity=53.4; qcov=1.11; evalue=0; confidence=high
GO	GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0003677 (DNA binding); GO:0006355 (regulation of DNA-templated transcription); GO:0008289 (lipid binding)
KEGG	-
Pfam	PF00046 (Homeodomain); PF01852 (START); PF25797 (PDF2_C)
InterPro	-
eggNOG	-
NR	GeneID:130996241

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057777731.1`
2	Chromosome	染色体	0.00000	`XP_057777731.1`
3	Centromere	着丝粒	0.00000	`XP_057777731.1`
4	Chromatin	染色质	0.00000	`XP_057777731.1`
5	Telomere	端粒	0.00000	`XP_057777731.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:43052527`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr7:43054254`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B14,B52,C55
`Chr7:43054560`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B115
`Chr7:43054800`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr7:43055057`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr7:43055059`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:43055293`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B132,B52,B86,C35
`Chr7:43055761`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:43055872`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B50,B57
`Chr7:43056013`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr7:43056044`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr7:43056138`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A2,A24,B94,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777731.1

785 aa

392

785

Homeodomain

START

PDF2_C

PF00046 Homeodomain 95-149 aa PF01852 START 299-521 aa PF25797 PDF2_C 538-768 aa

XP_057777732.1

785 aa

392

785

Homeodomain

START

PDF2_C

PF00046 Homeodomain 95-149 aa PF01852 START 299-521 aa PF25797 PDF2_C 538-768 aa

XP_057777733.1

784 aa

392

784

Homeodomain

START

PDF2_C

PF00046 Homeodomain 94-148 aa PF01852 START 298-520 aa PF25797 PDF2_C 537-767 aa

XP_057777734.1

784 aa

392

784

Homeodomain

START

PDF2_C

PF00046 Homeodomain 94-148 aa PF01852 START 298-520 aa PF25797 PDF2_C 537-767 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777731.1`	Pfam	`PF00046`	Homeodomain	Domain	95	149	7.6e-19	68.0	Homeodomain
`XP_057777731.1`	Pfam	`PF01852`	START	Domain	299	521	3.1e-35	122.2	START domain
`XP_057777731.1`	Pfam	`PF25797`	PDF2_C	Domain	538	768	2.9e-81	272.9	PDF2-like, C-terminal domain
`XP_057777732.1`	Pfam	`PF00046`	Homeodomain	Domain	95	149	7.6e-19	68.0	Homeodomain
`XP_057777732.1`	Pfam	`PF01852`	START	Domain	299	521	3.1e-35	122.2	START domain
`XP_057777732.1`	Pfam	`PF25797`	PDF2_C	Domain	538	768	2.9e-81	272.9	PDF2-like, C-terminal domain
`XP_057777733.1`	Pfam	`PF00046`	Homeodomain	Domain	94	148	7.6e-19	68.0	Homeodomain
`XP_057777733.1`	Pfam	`PF01852`	START	Domain	298	520	3.1e-35	122.2	START domain
`XP_057777733.1`	Pfam	`PF25797`	PDF2_C	Domain	537	767	2.9e-81	272.9	PDF2-like, C-terminal domain
`XP_057777734.1`	Pfam	`PF00046`	Homeodomain	Domain	94	148	7.6e-19	68.0	Homeodomain
`XP_057777734.1`	Pfam	`PF01852`	START	Domain	298	520	3.1e-35	122.2	START domain
`XP_057777734.1`	Pfam	`PF25797`	PDF2_C	Domain	537	767	2.9e-81	272.9	PDF2-like, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057921749.1
ACTCTAATCTTATAGAGAGAGAGAGAATCGCATTAAACAGCTGCTCTGCAACGCTGTTGAGAGAGATAGGAAGAAAGAGAGAGAAACGACAAATGATGTGTGTTTGGTGAAGAAACATATATAGAAGAAGATTGCGAAGAAGGTGAAGAAGCAGCAGCCAGCTTTAAAGCGCACAACCGACACGACTCGTTTGGAGAAGATTGAGATCATTAAAGAGGAAAAAAAGGAAGAAGAATGTATGGAGATTGTCAAGTTCTGTC...

XM_057921751.1
CTAATCTTATAGAGAGAGAGAGAATCGCATTAAACAGCTGCTCTGCAACGCTGTTGAGAGAGATAGGAAGAAAGAGAGAGAAACGACAAATGATGTGTGTTTGGTGAAGAAACATATATAGAAGAAGATTGCGAAGAAGGTGAAGAAGCAGCAGCCAGCTTTAAAGCGCACAACCGACACGACTCGTTTGGAGAAGATTGAGATCATTAAAGAGGAAAAAAAGGAAGAAGAATGTATGGAGATTGTCAAGTTCTGTCGTC...

CDS

4 records

下载 CDS FASTA

LOC130996241
ATGTATGGAGATTGTCAAGTTCTGTCGTCGTCAACAGTGGGAGGAAACCCTATTTCATCAGATAATTCATCTCTCTACAACTCCTCCATCCAAAACCCCAACTTCAATTTCATGGCTAACATCAGCCCTTTCAACATCTTCTCTCCGATTCTTCCACAGAAAGAAGAAACCGGGATGGCGAAGAGCAAAGAGGAATTAGTGGAAAGCGGCTCCGGCAGCGAGCACATCGAAGGAGCGTCGGGCAATGAGCAGGAGGCGGA...

Protein

4 records

下载 Protein FASTA

XP_057777731.1
MYGDCQVLSSSTVGGNPISSDNSSLYNSSIQNPNFNFMANISPFNIFSPILPQKEETGMAKSKEELVESGSGSEHIEGASGNEQEAEQQPPAKIKRYHRHTARQIQEMESLFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRQENVVLRAENESLKTENYRLQATLRNIVCPNCGGPAVLGEMGYDEQQLRIENARLKEEFERVCCMMSQYNGRGMGASSDLMQQQQQQQPHSLELDMGVYPPRKLDE...

XP_057777732.1
MYGDCQVLSSSTVGGNPISSDNSSLYNSSIQNPNFNFMANISPFNIFSPILPQKEETGMAKSKEELVESGSGSEHIEGASGNEQEAEQQPPAKIKRYHRHTARQIQEMESLFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRQENVVLRAENESLKTENYRLQATLRNIVCPNCGGPAVLGEMGYDEQQLRIENARLKEEFERVCCMMSQYNGRGMGASSDLMQQQQQQQPHSLELDMGVYPPRKLDE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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