当前解析结果
SmilChr07G003678| 统一新 Gene ID | SmilChr07G003678 |
|---|---|
| 名称 | SmilChr07G003678 |
| 描述 | uncharacterized SmilChr07G003678 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 44236411 - 44240343 / - |
| NCBI Gene ID | LOC130994259 |
|---|---|
| GeneID | 130994259 |
| locus_tag | - |
| NCBI Name | LOC130994259 |
| 原始查询 | SmilChr07G003678 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=low |
| 产物 | hit=Os08g0202300; species=rice; confidence=low |
| Arabidopsis | -- |
| Rice | Os08g0202300- identity=27.2; qcov=0.314; evalue=3.27e-41; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994259 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057775283.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057775283.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057775283.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775283.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775283.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:44236418 |
TAG |
T |
2bp_deletion | frameshift_variant | 24 | A14,A18,A6,A7,B100,B107,B34,B37,B41,B45,B5,B80,B82,B83,B94,C20,C3,C51,C56,C61,C78,C83,D2,D9 |
Chr7:44236422 |
A |
ATT |
2bp_insertion | frameshift_variant | 24 | A14,A18,A6,A7,B100,B107,B34,B37,B41,B45,B5,B80,B82,B83,B94,C20,C3,C51,C56,C61,C78,C83,D2,D9 |
Chr7:44236453 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B14,B17,B37 |
Chr7:44236456 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B109,B139,C51 |
Chr7:44236466 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B125,C50 |
Chr7:44236477 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B43,B78,B95,C20 |
Chr7:44236480 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,B44,B83 |
Chr7:44236494 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B12,C23,C41 |
Chr7:44236496 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B22,C23 |
Chr7:44236498 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B132,B53,B71,C30 |
Chr7:44236504 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B11,B31,B70,C30,C77 |
Chr7:44236513 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,A18,B105,B111 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775283.1PF00078
RVT_1 369-528 aa
PF17919
RT_RNaseH_2 540-638 aa
PF17917
RT_RNaseH 568-667 aa
PF13456
RVT_3 703-821 aa
PF00665
rve 924-1021 aa
PF31073
DUF8803 1145-1205 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775283.1 |
Pfam | PF00078 |
RVT_1 | Domain | 369 | 528 | 6.3e-29 | 102.0 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057775283.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 540 | 638 | 2.1e-18 | 66.9 | RNase H-like domain found in reverse transcriptase |
XP_057775283.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 568 | 667 | 2.8e-13 | 50.6 | RNase H-like domain found in reverse transcriptase |
XP_057775283.1 |
Pfam | PF13456 |
RVT_3 | Domain | 703 | 821 | 7.3e-14 | 52.5 | Reverse transcriptase-like |
XP_057775283.1 |
Pfam | PF00665 |
rve | Domain | 924 | 1021 | 8.1e-18 | 65.3 | Integrase core domain |
XP_057775283.1 |
Pfam | PF31073 |
DUF8803 | Domain | 1145 | 1205 | 9e-23 | 80.6 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。