Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003692`

染色体: Chr07 坐标: 44449679-44454309 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003692`
名称	SmilChr07G003692
描述	uncharacterized SmilChr07G003692
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	44449679 - 44454309 / `-`

ID 对照

NCBI Gene ID	`LOC130996270`
GeneID	`130996270`
locus_tag	`-`
NCBI Name	`LOC130996270`
原始查询	`SmilChr07G003692`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os05g0359000; species=rice; confidence=low
产物	hit=Os05g0359000; species=rice; confidence=low
Arabidopsis	`AT1G40087` (AT1G40087) Plant transposase (Ptta/En/Spm family) [Source:NCBI gene (formerly Entrezgene);Acc:840721] identity=22.2; qcov=0.697; evalue=4.88e-06; confidence=weak
Rice	`Os05g0359000` - identity=25.7; qcov=0.865; evalue=3.33e-17; confidence=low
GO	-
KEGG	-
Pfam	PF03004 (Transposase_24)
InterPro	-
eggNOG	-
NR	GeneID:130996270

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057777763.1`
2	Chromosome	染色体	0.00000	`XP_057777763.1`
3	Centromere	着丝粒	0.00000	`XP_057777763.1`
4	Chromatin	染色质	0.00000	`XP_057777763.1`
5	Telomere	端粒	0.00000	`XP_057777763.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:44450035`	`C`	`CT`	1bp_insertion	frameshift_variant	12	B126,B135,B20,B66,B74,B87,B99,C41,C64,C66,C78,C85
`Chr7:44450140`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr7:44450170`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B120,B131,C32
`Chr7:44450249`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B58,B86,C29,C50,C77
`Chr7:44451171`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B132,B5
`Chr7:44451200`	`G`	`A`	EMS_canonical_SNV	stop_gained	6	B110,B82,C18,C39,C9,D5
`Chr7:44451221`	`G`	`GC`	1bp_insertion	frameshift_variant	2	B28,C47
`Chr7:44451221`	`G`	`GC`	1bp_insertion	CDS_variant	2	B28,C47
`Chr7:44451397`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A15,B118,B36
`Chr7:44451409`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B86,B9,C10
`Chr7:44451432`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr7:44451437`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B5,C84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777763.1

297 aa

148

297

Transposase_24

PF03004 Transposase_24 145-238 aa

XP_057777764.1

297 aa

148

297

Transposase_24

PF03004 Transposase_24 145-238 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777763.1`	Pfam	`PF03004`	Transposase_24	Family	145	238	1.6e-13	51.7	Plant transposase (Ptta/En/Spm family)
`XP_057777764.1`	Pfam	`PF03004`	Transposase_24	Family	145	238	1.6e-13	51.7	Plant transposase (Ptta/En/Spm family)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057921780.1
AATACACGAACTTTGATAAAAGTTGCAATTTTCATCTGAACTTTCAAATTAGCCAAAATATAACCCCATTTTTTTTTTTTAAATGCCAATGTTTTGGATAACAACTAAATAAAGTACATTTTTTTTGGAAAAAGACGTCAGCTTTTTTATTTAAAAGCTGAAAAATATTTTTTTTAATGCATGAAACAACTTTAAAAAATACCCAAAAAAATAGCCAATTTGCAAGAGGCAGGAATCGAACTCTTGCCCATGTATTTTGA...

XM_057921781.1
TTGAGTGAACAATGATATTTTGAATGTTGATTTGTAGATTGGATGGCTTCAATTAGCAGCAGGAACTCCACTGTTGCATCTTCTAAGTCAAAGAGAGGAAAAATTTGTTTAAATGGTGTTGCTCAGAGAAGGGCCAAAGGAATCAAGCATGTAGTCGAGTTCAATAAATATGGACAACCAGTGGGCAAAGTTGCAGCTGAAATGCAGAGCTATATTGGGCTACTTACTCGGGAGCATGTTAAGATAAATATTAAGACTTG...

CDS

2 records

下载 CDS FASTA

LOC130996270
ATGGCTTCAATTAGCAGCAGGAACTCCACTGTTGCATCTTCTAAGTCAAAGAGAGGAAAAATTTGTTTAAATGGTGTTGCTCAGAGAAGGGCCAAAGGAATCAAGCATGTAGTCGAGTTCAATAAATATGGACAACCAGTGGGCAAAGTTGCAGCTGAAATGCAGAGCTATATTGGGCTACTTACTCGGGAGCATGTTAAGATAAATATTAAGACTTGGAAACAAGTGCCAGATGATGTGAAAGAGGTTATTTGGGAATC...

Protein

2 records

下载 Protein FASTA

XP_057777763.1
MASISSRNSTVASSKSKRGKICLNGVAQRRAKGIKHVVEFNKYGQPVGKVAAEMQSYIGLLTREHVKINIKTWKQVPDDVKEVIWESVTSSYEVPQAWKVGCMKSASVKWRNWKHALRKEYILPNEKDHVKLYEPPQGSGISEREWNQFVIYCISNDFKNLSDEQKERRQKNIYPHRLSRKGYAALAEEMKDELLGDENIDRAIMWKKARLKKDGSVENEDLKKVVEKIDERLREKEQGDSTKVDGFYVMRFMKEIVKAC...

XP_057777764.1
MASISSRNSTVASSKSKRGKICLNGVAQRRAKGIKHVVEFNKYGQPVGKVAAEMQSYIGLLTREHVKINIKTWKQVPDDVKEVIWESVTSSYEVPQAWKVGCMKSASVKWRNWKHALRKEYILPNEKDHVKLYEPPQGSGISEREWNQFVIYCISNDFKNLSDEQKERRQKNIYPHRLSRKGYAALAEEMKDELLGDENIDRAIMWKKARLKKDGSVENEDLKKVVEKIDERLREKEQGDSTKVDGFYVMRFMKEIVKAC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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