当前解析结果
SmilChr07G003708| 统一新 Gene ID | SmilChr07G003708 |
|---|---|
| 名称 | SmilChr07G003708 |
| 描述 | cysteine-rich receptor-like protein kinase 44 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 44740165 - 44753765 / - |
| NCBI Gene ID | LOC130996267 |
|---|---|
| GeneID | 130996267 |
| locus_tag | - |
| NCBI Name | LOC130996267 |
| 原始查询 | SmilChr07G003708 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cysteine-rich receptor-like protein kinase 44 |
| 产物 | cysteine-rich receptor-like protein kinase 44 |
| Arabidopsis | AT4G21410 (CRK29)cysteine-rich RLK (RECEPTOR-like protein kinase) 29 [Source:NCBI gene (formerly Entrezgene);Acc:827893] identity=45.5; qcov=0.992; evalue=1.11e-178; confidence=high |
| Rice | Os07g0538200 (OJ1058_A12.145)- identity=43; qcov=0.957; evalue=1.55e-155; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF01657 (Stress-antifung); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996267 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057777759.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057777759.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057777759.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057777759.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057777759.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:44740355 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C27,C63 |
Chr7:44740411 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr7:44740430 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr7:44740461 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr7:44740480 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A14,A8,B3,B81,B88 |
Chr7:44740615 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr7:44740616 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,B5,B7,B87,C2 |
Chr7:44741161 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr7:44741185 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B132,C35 |
Chr7:44741187 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr7:44741233 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr7:44741236 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777759.1PF01657
Stress-antifung 28-118 aa
PF01657
Stress-antifung 142-227 aa
PF00069
Pkinase 334-605 aa
PF07714
PK_Tyr_Ser-Thr 336-549 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777759.1 |
Pfam | PF01657 |
Stress-antifung | Family | 28 | 118 | 1.1e-33 | 116.6 | Salt stress response/antifungal |
XP_057777759.1 |
Pfam | PF01657 |
Stress-antifung | Family | 142 | 227 | 1.1e-33 | 116.6 | Salt stress response/antifungal |
XP_057777759.1 |
Pfam | PF00069 |
Pkinase | Domain | 334 | 605 | 2.1e-47 | 162.5 | Protein kinase domain |
XP_057777759.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 336 | 549 | 1.1e-49 | 169.8 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。