Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003710`

染色体: Chr07 坐标: 44820859-44827004 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003710`
名称	SmilChr07G003710
描述	cysteine-rich receptor-like protein kinase 44
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	44820859 - 44827004 / `-`

ID 对照

NCBI Gene ID	`LOC130996266`
GeneID	`130996266`
locus_tag	`-`
NCBI Name	`LOC130996266`
原始查询	`SmilChr07G003710`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cysteine-rich receptor-like protein kinase 44
产物	cysteine-rich receptor-like protein kinase 44
Arabidopsis	`AT4G21410` (CRK29) cysteine-rich RLK (RECEPTOR-like protein kinase) 29 [Source:NCBI gene (formerly Entrezgene);Acc:827893] identity=43.6; qcov=1.09; evalue=9.2e-173; confidence=medium
Rice	`Os07g0537000` (OJ1058_A12.133-1) - identity=40.2; qcov=0.994; evalue=5.19e-142; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF01657 (Stress-antifung); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:130996266

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057777757.1`
2	Nucleus	细胞核	0.00000	`XP_057777757.1`
3	Chromosome	染色体	0.00000	`XP_057777757.1`
4	Centromere	着丝粒	0.00000	`XP_057777757.1`
5	Chromatin	染色质	0.00000	`XP_057777757.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:44821173`	`G`	`GA`	1bp_insertion	frameshift_variant	6	B121,B25,B68,C11,C51,C69
`Chr7:44821289`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	B64
`Chr7:44821289`	`TCA`	`T`	2bp_deletion	CDS_variant	1	B64
`Chr7:44821678`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B14
`Chr7:44821682`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B38,B39,D3
`Chr7:44822336`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B134
`Chr7:44822336`	`TC`	`T`	1bp_deletion	CDS_variant	1	B134
`Chr7:44822343`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr7:44822486`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A1,B5,B7,C2
`Chr7:44822559`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B38,B39,D3
`Chr7:44822566`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B87
`Chr7:44826099`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777757.1

668 aa

334

668

Stress-antifung

Pkinase

PK_Tyr_Ser-Thr

PF01657 Stress-antifung 29-119 aa PF01657 Stress-antifung 138-232 aa PF00069 Pkinase 344-614 aa PF07714 PK_Tyr_Ser-Thr 346-558 aa

XP_057777758.1

621 aa

310

621

Stress-antifung

Pkinase

PK_Tyr_Ser-Thr

PF01657 Stress-antifung 29-119 aa PF01657 Stress-antifung 138-232 aa PF00069 Pkinase 297-567 aa PF07714 PK_Tyr_Ser-Thr 299-511 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777757.1`	Pfam	`PF01657`	Stress-antifung	Family	29	119	6.8e-32	110.8	Salt stress response/antifungal
`XP_057777757.1`	Pfam	`PF01657`	Stress-antifung	Family	138	232	6.8e-32	110.8	Salt stress response/antifungal
`XP_057777757.1`	Pfam	`PF00069`	Pkinase	Domain	344	614	5.3e-47	161.1	Protein kinase domain
`XP_057777757.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	346	558	1.1e-46	160.0	Protein tyrosine and serine/threonine kinase
`XP_057777758.1`	Pfam	`PF01657`	Stress-antifung	Family	29	119	5.8e-32	111.0	Salt stress response/antifungal
`XP_057777758.1`	Pfam	`PF01657`	Stress-antifung	Family	138	232	5.8e-32	111.0	Salt stress response/antifungal
`XP_057777758.1`	Pfam	`PF00069`	Pkinase	Domain	297	567	4.5e-47	161.4	Protein kinase domain
`XP_057777758.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	299	511	8.8e-47	160.3	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057921775.1
TCAAATAAAGATTTTACAATTCCATTCCTTCTTTTTAGAACTCGCAATTCCATTTCTTTGGTATTTCTTGTACATATCAAGCATTTGAATTATCTAAGATTTGTCATTCCTTTCTCATCTTGATTCCATTCATACTTTCATTTCATTGCACCCTCATTCCATTCCATCGTACCAATCACCTCCTAAGTAACATACACATAGTCCAAACACACACATATAAAATGACGCGACGATGAGTTCGCTTACGGTGGACTGAGAAC...

XM_057921774.1
TCAAATAAAGATTTTACAATTCCATTCCTTCTTTTTAGAACTCGCAATTCCATTTCTTTGGTATTTCTTGTACATATCAAGCATTTGAATTATCTAAGATTTGTCATTCCTTTCTCATCTTGATTCCATTCATACTTTCATTTCATTGCACCCTCATTCCATTCCATCGTACCAATCACCTCCTAAGTAACATACACATAGTCCAAACACACACATATAAAATGACGCGACGATGAGTTCGCTTACGGTGGACTGAGAAC...

CDS

2 records

下载 CDS FASTA

LOC130996266
ATGATGAGTTGGGGAACATGGCTTCTCTTAATCCTCACAAACCTTCACGCCCTGGCAAGAGCGCAGCAGTACGGCTGCTTCGGCGGCAACTACACTTCAAACTCCACATACGCCGCCAACCTCAACTCCCTCCTCTCATCCCTCCCACCAAACATCGACGACGCCGGATTCTACAACGCCTCCTCCCAAGCTCCGGCCACCGATCCAGCCTACGCCTCCGCCCTCTGCAGAACCGACTCCCAGCTCAACTCATGCCGCGC...

Protein

2 records

下载 Protein FASTA

XP_057777757.1
MMSWGTWLLLILTNLHALARAQQYGCFGGNYTSNSTYAANLNSLLSSLPPNIDDAGFYNASSQAPATDPAYASALCRTDSQLNSCRACVRNATTQLLTLCSNRRQGVLFREACTLRYSDNPMYGLLFDDYSITGRSTANLSSSGQFGASVRALLGDLSKQAAAGGLMVKVAAGNSSASASDGTVFALVQCTPDLSSRDCSNCLAGLVQRVPGCCNGSTFVIMFVPSCTLRFQLQPFYNLTRIQQVQAMVYVSPPPAPGPP...

XP_057777758.1
MMSWGTWLLLILTNLHALARAQQYGCFGGNYTSNSTYAANLNSLLSSLPPNIDDAGFYNASSQAPATDPAYASALCRTDSQLNSCRACVRNATTQLLTLCSNRRQGVLFREACTLRYSDNPMYGLLFDDYSITGRSTANLSSSGQFGASVRALLGDLSKQAAAGGLMVKVAAGNSSASASDGTVFALVQCTPDLSSRDCSNCLAGLVQRVPGCCNGSTFVIMFVPSCTLRFQLQPFYNLTRIQQVQAMVYVSPPPAPGPP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器