当前解析结果
SmilChr07G003757| 统一新 Gene ID | SmilChr07G003757 |
|---|---|
| 名称 | SmilChr07G003757 |
| 描述 | protein NRT1/ PTR FAMILY 7.3 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 45759131 - 45763763 / - |
| NCBI Gene ID | LOC130992771 |
|---|---|
| GeneID | 130992771 |
| locus_tag | - |
| NCBI Name | LOC130992771 |
| 原始查询 | SmilChr07G003757 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein NRT1/ PTR FAMILY 7.3 |
| 产物 | protein NRT1/ PTR FAMILY 7.3 |
| Arabidopsis | AT1G32450 (NRT1.5)nitrate transporter 1.5 [Source:NCBI gene (formerly Entrezgene);Acc:840139] identity=71; qcov=1.02; evalue=0; confidence=high |
| Rice | Os02g0716800 (OsNRT1.5B)- identity=63.5; qcov=0.953; evalue=0; confidence=high |
| GO | GO:0016020 (membrane); GO:0022857 (transmembrane transporter activity); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00854 (PTR2); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992771 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057773496.1 |
| 2 | Vacuole | 液泡 | 0.40000 | XP_057773496.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057773496.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057773496.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057773496.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:45759462 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A3,B119,C31 |
Chr7:45759504 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:45759537 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C37,C60,C83,D4 |
Chr7:45759614 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B90,B92,C21 |
Chr7:45759631 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B121 |
Chr7:45759644 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
Chr7:45759761 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr7:45759768 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr7:45759804 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B30,C60 |
Chr7:45759836 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B59,C59,C85 |
Chr7:45759927 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr7:45760238 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057773496.1PF07690
MFS_1 45-516 aa
PF00854
PTR2 106-535 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773496.1 |
Pfam | PF07690 |
MFS_1 | Family | 45 | 516 | 9.2e-10 | 38.7 | Major Facilitator Superfamily |
XP_057773496.1 |
Pfam | PF00854 |
PTR2 | Family | 106 | 535 | 4.4e-93 | 313.0 | POT family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。