当前解析结果
SmilChr07G003772| 统一新 Gene ID | SmilChr07G003772 |
|---|---|
| 名称 | SmilChr07G003772 |
| 描述 | lon protease homolog 2, peroxisomal |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 46149339 - 46161669 / - |
| NCBI Gene ID | LOC130992783 |
|---|---|
| GeneID | 130992783 |
| locus_tag | - |
| NCBI Name | LOC130992783 |
| 原始查询 | SmilChr07G003772 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | lon protease homolog 2, peroxisomal |
| 产物 | lon protease homolog 2%2C peroxisomal |
| Arabidopsis | AT5G47040 (LON2)lon protease 2 [Source:NCBI gene (formerly Entrezgene);Acc:834750] identity=86.2; qcov=0.965; evalue=0; confidence=high |
| Rice | Os09g0533400 (OsLon1)- identity=86.5; qcov=0.964; evalue=0; confidence=high |
| GO | GO:0004176 (ATP-dependent peptidase activity); GO:0004252 (serine-type endopeptidase activity); GO:0005524 (ATP binding); GO:0005782 (peroxisomal matrix); GO:0006515 (protein quality control for misfolded or incompletely synthesized proteins); GO:0006625 (protein targeting to peroxisome); GO:0016485 (protein processing); GO:0016887 (ATP hydrolysis activity); GO:0030163 (protein catabolic process) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF02190 (LON_substr_bdg); PF05362 (Lon_C); PF07728 (AAA_5); PF22667 (Lon_lid) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992783 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057773521.1 |
| 2 | Peroxisome | 过氧化物酶体 | 0.80000 | XP_057773520.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057773520.1 |
| 4 | Mitochondrion matrix | 线粒体基质 | 0.20000 | XP_057773520.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057773521.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:46149934 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr7:46152255 |
CCT |
C |
2bp_deletion | frameshift_variant | 1 | C47 |
Chr7:46152255 |
CCT |
C |
2bp_deletion | CDS_variant | 1 | C47 |
Chr7:46152325 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B44,B69 |
Chr7:46153942 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B112,B59 |
Chr7:46153971 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B132,C32 |
Chr7:46154101 |
TC |
T |
1bp_deletion | frameshift_variant | 40 | A20,B1,B114,B117,B118,B125,B127,B132,B134,B140,B16,B20,B26,B28,B35,B37,B4,B46,B51,B52,B89,B9,B92,B93,C26,C31,C36,C39,C42,C6,C74,C83,C85,C86,D10,D11,D4,D5,D7,D8 |
Chr7:46154944 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B111,B27,B50 |
Chr7:46155855 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B47,B8,B93 |
Chr7:46155880 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B42,B43,B44,B58,C58 |
Chr7:46155906 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B11,B114,B17,B73,C30 |
Chr7:46155910 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773520.1PF02190
LON_substr_bdg 11-255 aa
PF07728
AAA_5 406-540 aa
PF00004
AAA 406-543 aa
PF22667
Lon_lid 568-618 aa
PF05362
Lon_C 671-877 aa
XP_057773521.1PF02190
LON_substr_bdg 31-175 aa
PF07728
AAA_5 326-460 aa
PF00004
AAA 326-463 aa
PF22667
Lon_lid 488-538 aa
PF05362
Lon_C 591-797 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773520.1 |
Pfam | PF02190 |
LON_substr_bdg | Family | 11 | 255 | 6.9e-30 | 105.2 | ATP-dependent protease La (LON) substrate-binding domain |
XP_057773520.1 |
Pfam | PF07728 |
AAA_5 | Domain | 406 | 540 | 2.6e-08 | 34.7 | AAA domain (dynein-related subfamily) |
XP_057773520.1 |
Pfam | PF00004 |
AAA | Domain | 406 | 543 | 2.9e-25 | 89.9 | ATPase family associated with various cellular activities (AAA) |
XP_057773520.1 |
Pfam | PF22667 |
Lon_lid | Domain | 568 | 618 | 3e-16 | 59.5 | Lon protease AAA+ ATPase lid domain |
XP_057773520.1 |
Pfam | PF05362 |
Lon_C | Domain | 671 | 877 | 1.7e-76 | 257.1 | Lon protease (S16) C-terminal proteolytic domain |
XP_057773521.1 |
Pfam | PF02190 |
LON_substr_bdg | Family | 31 | 175 | 1.3e-17 | 65.1 | ATP-dependent protease La (LON) substrate-binding domain |
XP_057773521.1 |
Pfam | PF07728 |
AAA_5 | Domain | 326 | 460 | 2.2e-08 | 34.9 | AAA domain (dynein-related subfamily) |
XP_057773521.1 |
Pfam | PF00004 |
AAA | Domain | 326 | 463 | 2.4e-25 | 90.2 | ATPase family associated with various cellular activities (AAA) |
XP_057773521.1 |
Pfam | PF22667 |
Lon_lid | Domain | 488 | 538 | 2.6e-16 | 59.7 | Lon protease AAA+ ATPase lid domain |
XP_057773521.1 |
Pfam | PF05362 |
Lon_C | Domain | 591 | 797 | 1.5e-76 | 257.3 | Lon protease (S16) C-terminal proteolytic domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。