Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003789`

染色体: Chr07 坐标: 46554910-46610388 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003789`
名称	SmilChr07G003789
描述	uncharacterized SmilChr07G003789
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	46554910 - 46610388 / `+`

ID 对照

NCBI Gene ID	`LOC130992794`
GeneID	`130992794`
locus_tag	`-`
NCBI Name	`LOC130992794`
原始查询	`SmilChr07G003789`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pleckstrin homology (PH) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:827424]; symbol=AT4G17140; hit=AT4G17140; species=arabidopsis; confidence=high
产物	pleckstrin homology (PH) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:827424]; symbol=AT4G17140; hit=AT4G17140; species=arabidopsis; confidence=high
Arabidopsis	`AT4G17140` (AT4G17140) pleckstrin homology (PH) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:827424] identity=57.3; qcov=0.671; evalue=0; confidence=high
Rice	`Os10g0565300` - identity=57.7; qcov=0.213; evalue=0; confidence=weak
GO	GO:0006623 (protein targeting to vacuole); GO:0019898 (extrinsic component of membrane); GO:0045053 (protein retention in Golgi apparatus)
KEGG	smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF06101 (Vps62); PF12624 (VPS13_N); PF25036 (VPS13_VAB); PF25037 (VPS13_C)
InterPro	-
eggNOG	-
NR	GeneID:130992794

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	0.80000	`XP_057773525.1`
2	Endosome	内体	0.60000	`XP_057773525.1`
3	Trans-golgi network	Trans-golgi network	0.40000	`XP_057773525.1`
4	Endosome membrane	内体膜	0.40000	`XP_057773525.1`
5	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057773525.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:46558689`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C43,C87
`Chr7:46560212`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B47,B8,B93
`Chr7:46563612`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B111,B27,B50,B57
`Chr7:46564526`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:46565192`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C37,D4
`Chr7:46565563`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B11,B114,B17,B73,C30
`Chr7:46565578`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr7:46569164`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B91,D10
`Chr7:46569191`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr7:46575711`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B11,B114,B17,B73,C30
`Chr7:46575725`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr7:46577470`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B114,B17,B73,C30

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773525.1

4369 aa

2184

4369

VPS13_N

Vps62

VPS13_VAB

VPS13_C

Vps62

PF12624 VPS13_N 1-477 aa PF06101 Vps62 2026-2170 aa PF06101 Vps62 2254-2401 aa PF25036 VPS13_VAB 2999-3239 aa PF25036 VPS13_VAB 3342-3511 aa PF25037 VPS13_C 3961-4069 aa PF06101 Vps62 4244-4318 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773525.1`	Pfam	`PF12624`	VPS13_N	Repeat	1	477	4.8e-110	369.9	VPS13-like family N-terminal region
`XP_057773525.1`	Pfam	`PF06101`	Vps62	Family	2026	2170	1.2e-33	117.1	Vacuolar protein sorting-associated protein 62
`XP_057773525.1`	Pfam	`PF06101`	Vps62	Family	2254	2401	1.2e-33	117.1	Vacuolar protein sorting-associated protein 62
`XP_057773525.1`	Pfam	`PF25036`	VPS13_VAB	Domain	2999	3239	2e-20	73.5	Vacuolar-sorting associated protein 13, adaptor binding domain
`XP_057773525.1`	Pfam	`PF25036`	VPS13_VAB	Domain	3342	3511	2e-20	73.5	Vacuolar-sorting associated protein 13, adaptor binding domain
`XP_057773525.1`	Pfam	`PF25037`	VPS13_C	Domain	3961	4069	3.2e-11	43.9	Intermembrane lipid transfer protein VPS13, C-terminal
`XP_057773525.1`	Pfam	`PF06101`	Vps62	Family	4244	4318	1.2e-33	117.1	Vacuolar protein sorting-associated protein 62

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057917542.1
TCGATCTTTTCTTATTGCATTGCAAGTAACGTGCGTGGCTTCCTCTGCTCAAAAGCAAAGAAGCTTTCTCTCGCTCTCTCTCTCTCTTCACACACACCTCGTTCTCTTCAACTACTCGAATCAGGGTATAGGATTTAAGAGTATGTGATCATACTTGCCTGCTTAGATTTTGGGAAATTTGAAAGATGTTGGAGGATCAGGTAGCGTATCTGTTGCAGAGGTATTTGGGCAACTATGTCCGAGGACTCAACAAAGAGGCT...

CDS

1 records

下载 CDS FASTA

LOC130992794
ATGTTGGAGGATCAGGTAGCGTATCTGTTGCAGAGGTATTTGGGCAACTATGTCCGAGGACTCAACAAAGAGGCTCTCAAGATCAGTGTCTGGCAAGGTGATGTAGAACTTACCAATATGGAACTGAAGCCAGAGGCTCTCAATGCATTAAAATTACCAGTGAAGGTTAAGGCTGGGTTTCTTGGATCAGTGAAGCTTAAGGTTCCATGGAGCAGGCTTGGGCAAGACCCTGTTTTAGTTTCTCTAGATCGCATTTTTTT...

Protein

1 records

下载 Protein FASTA

XP_057773525.1
MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMELKPEALNALKLPVKVKAGFLGSVKLKVPWSRLGQDPVLVSLDRIFLLAEPSTMVEGSSEDAVQEVKKSRIRELEKKLVESQQQLNMEMNKSWLGSLINTVIGNLKLSISNIHIRYEDLESNPGHPFAAGVTLDKLSAFTVNDKGEETFVTGGALERIQKSVKLERMAIYMDSDISPWYIGKSWEDLLPSEWEQIFKFGTKDGKPAASNQEKHSYVLQPV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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