当前解析结果
SmilChr07G003810| 统一新 Gene ID | SmilChr07G003810 |
|---|---|
| 名称 | SmilChr07G003810 |
| 描述 | uncharacterized SmilChr07G003810 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 46952603 - 46954672 / - |
| NCBI Gene ID | LOC130994298 |
|---|---|
| GeneID | 130994298 |
| locus_tag | - |
| NCBI Name | LOC130994298 |
| 原始查询 | SmilChr07G003810 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=low |
| 产物 | hit=Os04g0191000; species=rice; confidence=low |
| Arabidopsis | AT3G01410 (AT3G01410)Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319] identity=37.4; qcov=0.144; evalue=6.06e-12; confidence=weak |
| Rice | Os04g0191000- identity=26.8; qcov=0.444; evalue=1.06e-20; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF29688 (TnsB_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994298 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057775328.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057775328.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057775328.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775328.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775328.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:46952613 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C81 |
Chr7:46952632 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B134,B34,C2,C38,C50 |
Chr7:46952714 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:46952807 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B34,C2,C50 |
Chr7:46952808 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr7:46952847 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B123,C34,C65 |
Chr7:46952902 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B134,B34,C2,C38,C50 |
Chr7:46952911 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B134,B34,C2,C38,C50 |
Chr7:46953137 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B134,B34,C2,C38,C50 |
Chr7:46953151 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B134,B34,C2,C38,C50 |
Chr7:46953167 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr7:46953171 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A16,A18,A3,B58,C11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775328.1PF17919
RT_RNaseH_2 4-102 aa
PF17917
RT_RNaseH 32-131 aa
PF00075
RNase_H 180-263 aa
PF13456
RVT_3 183-300 aa
PF17921
Integrase_H2C2 391-447 aa
PF00665
rve 466-562 aa
PF29688
TnsB_C 523-583 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775328.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 4 | 102 | 1.4e-25 | 90.0 | RNase H-like domain found in reverse transcriptase |
XP_057775328.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 32 | 131 | 6e-22 | 78.5 | RNase H-like domain found in reverse transcriptase |
XP_057775328.1 |
Pfam | PF00075 |
RNase_H | Domain | 180 | 263 | 2e-09 | 38.5 | RNase H |
XP_057775328.1 |
Pfam | PF13456 |
RVT_3 | Domain | 183 | 300 | 8.2e-19 | 68.5 | Reverse transcriptase-like |
XP_057775328.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 391 | 447 | 1.1e-09 | 39.0 | Integrase zinc binding domain |
XP_057775328.1 |
Pfam | PF00665 |
rve | Domain | 466 | 562 | 3.1e-17 | 63.4 | Integrase core domain |
XP_057775328.1 |
Pfam | PF29688 |
TnsB_C | Domain | 523 | 583 | 1.3e-09 | 38.7 | TnsB C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。