当前解析结果
SmilChr07G003820| 统一新 Gene ID | SmilChr07G003820 |
|---|---|
| 名称 | SmilChr07G003820 |
| 描述 | SNARE-interacting protein KEULE-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 47195708 - 47215812 / - |
| NCBI Gene ID | LOC130992818 |
|---|---|
| GeneID | 130992818 |
| locus_tag | - |
| NCBI Name | LOC130992818 |
| 原始查询 | SmilChr07G003820 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | SNARE-interacting protein KEULE-like |
| 产物 | SNARE-interacting protein KEULE-like |
| Arabidopsis | AT1G12360 (KEU)Sec1/munc18-like (SM) proteins superfamily [Source:NCBI gene (formerly Entrezgene);Acc:837791] identity=77.8; qcov=0.988; evalue=0; confidence=high |
| Rice | Os06g0135900- identity=63.8; qcov=0.785; evalue=0; confidence=high |
| GO | GO:0005886 (plasma membrane); GO:0006886 (intracellular protein transport); GO:0006904 (GO:0006904); GO:0016192 (vesicle-mediated transport); GO:0019905 (syntaxin binding); GO:0030141 (secretory granule) |
| KEGG | - |
| Pfam | PF00995 (Sec1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992818 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057773551.1 |
| 2 | Clathrin-coated vesicle | Clathrin-coated vesicle | 0.60000 | XP_057773551.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057773551.1 |
| 4 | Cytoplasmic vesicle | 细胞质囊泡 | 0.40000 | XP_057773551.1 |
| 5 | Endocytic vesicle | Endocytic vesicle | 0.40000 | XP_057773551.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:47195967 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,B108,B111,B119,C31 |
Chr7:47196003 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C32 |
Chr7:47204356 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B52,B86,B93,C20,C7 |
Chr7:47205214 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B108,B122,B81 |
Chr7:47206210 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,C45 |
Chr7:47206225 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:47206241 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr7:47206367 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr7:47206421 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B111,B27,B50,B57 |
Chr7:47206591 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B137,B70 |
Chr7:47207003 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B52,B86,B93,C20,C7 |
Chr7:47207027 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057773551.1PF00995
Sec1 44-648 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773551.1 |
Pfam | PF00995 |
Sec1 | Family | 44 | 648 | 1.5e-132 | 444.5 | Sec1 family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。