Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003823`

染色体: Chr07 坐标: 47272962-47281454 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003823`
名称	SmilChr07G003823
描述	uncharacterized SmilChr07G003823
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	47272962 - 47281454 / `-`

ID 对照

NCBI Gene ID	`LOC130992821`
GeneID	`130992821`
locus_tag	`-`
NCBI Name	`LOC130992821`
原始查询	`SmilChr07G003823`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826831]; symbol=AT4G12230; hit=AT4G12230; species=arabidopsis; confidence=high
产物	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826831]; symbol=AT4G12230; hit=AT4G12230; species=arabidopsis; confidence=high
Arabidopsis	`AT4G12230` (AT4G12230) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826831] identity=84.9; qcov=0.961; evalue=1.27e-139; confidence=high
Rice	`Os10g0169800` - identity=78.1; qcov=0.921; evalue=1.81e-125; confidence=high
GO	-
KEGG	smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00561 (Abhydrolase_1); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:130992821

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057773553.1`
2	Lipid droplet	脂滴	0.40000	`XP_057773553.1`
3	Cytosol	细胞质基质	0.20000	`XP_057773553.1`
4	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057773553.1`
5	Nucleus	细胞核	0.00000	`XP_057773553.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:47273092`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C78
`Chr7:47275908`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B13,B67,B87,C70,C78
`Chr7:47276517`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B67,C70,C78
`Chr7:47276529`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773553.1

233 aa

116

233

Abhydrolase_1

Abhydrolase_6

PF00561 Abhydrolase_1 41-165 aa PF12697 Abhydrolase_6 43-177 aa

XP_057773554.1

228 aa

114

228

Abhydrolase_1

Abhydrolase_6

PF00561 Abhydrolase_1 41-165 aa PF12697 Abhydrolase_6 43-177 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773553.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	41	165	1.3e-17	65.1	alpha/beta hydrolase fold
`XP_057773553.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	43	177	4.7e-07	31.4	Alpha/beta hydrolase family
`XP_057773554.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	41	165	1.2e-17	65.1	alpha/beta hydrolase fold
`XP_057773554.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	43	177	5.1e-07	31.3	Alpha/beta hydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917571.1
TATATTACATTTAGTAAATGTACAATTTGTTGTAAACAAAAGTAATTTTTACAGTGAACCAATGTACCAATGTATACATTTATACATATATACCTAAATGATTAAATTTGTTTTGGAACTTCAATAATTTTCAGAAAACTTTATGGTTTGCACCGCCGTTGAGATGGTTGAGATTGTCGGAAATTCAGGTGACGACGACAATTGTCCGAGGTTGAGGTCGACAAGGGAGTAGATGTTAGGGTTTTCGCCGTCTGAAAAAA...

XM_057917570.1
TATATTACATTTAGTAAATGTACAATTTGTTGTAAACAAAAGTAATTTTTACAGTGAACCAATGTACCAATGTATACATTTATACATATATACCTAAATGATTAAATTTGTTTTGGAACTTCAATAATTTTCAGAAAACTTTATGGTTTGCACCGCCGTTGAGATGGTTGAGATTGTCGGAAATTCAGGTGACGACGACAATTGTCCGAGGTTGAGGTCGACAAGGGAGTAGATGTTAGGGTTTTCGCCGTCTGAAAAAA...

CDS

2 records

下载 CDS FASTA

LOC130992821
ATGAAAGGCTTATTCTCAGTGCCCGGCGACTACATCTACTTCAAGTCTCAGGTCCCTCTACACAAAATCCCTATTGGCTCAAAGCAGTGGAGATATTATGATTTTGGCCCAAAATATGTGCCTCCTTTAATCTGTTTGCCTGGTATAGCTGGAACTGCAGATGTGTACTACAAACAAATCATGTCACTATCTAATAAGGGTTATCGAGTCATATCAGTTGATATTCCCCGTGTATGGAATAATAATGAGTGGATCCAAGC...

Protein

2 records

下载 Protein FASTA

XP_057773553.1
MKGLFSVPGDYIYFKSQVPLHKIPIGSKQWRYYDFGPKYVPPLICLPGIAGTADVYYKQIMSLSNKGYRVISVDIPRVWNNNEWIQAFEKFLDAIDVHHIHLYGSSLGGFLAQLFAQHRPRRVKSLVLSNTFLETSNFSAAMPWAPIVGWSPSFLLKRYVLTGIRDGPHEPFIADSVDFVVAQVETLSKDDLASRLSLTVDSASVGPLRLSDAFITIMDKMRQFFVIYSKQIK

XP_057773554.1
MKGLFSVPGDYIYFKSQVPLHKIPIGSKQWRYYDFGPKYVPPLICLPGIAGTADVYYKQIMSLSNKGYRVISVDIPRVWNNNEWIQAFEKFLDAIDVHHIHLYGSSLGGFLAQLFAQHRPRRVKSLVLSNTFLETSNFSAAMPWAPIVGWSPSFLLKRYVLTGIRDGPHEPFIADSVDFVVAQVETLSKDDLASRLSLTVDSASVGPLRLSDAFITIMDDLKNISGCL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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