当前解析结果
SmilChr07G003828| 统一新 Gene ID | SmilChr07G003828 |
|---|---|
| 名称 | SmilChr07G003828 |
| 描述 | glutathione S-transferase T3-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 47357811 - 47358818 / + |
| NCBI Gene ID | LOC130994306 |
|---|---|
| GeneID | 130994306 |
| locus_tag | - |
| NCBI Name | LOC130994306 |
| 原始查询 | SmilChr07G003828 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glutathione S-transferase T3-like |
| 产物 | glutathione S-transferase T3-like |
| Arabidopsis | AT3G47680 (AT3G47680)DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922] identity=36; qcov=0.373; evalue=6.56e-15; confidence=low |
| Rice | Os11g0303800- identity=22.8; qcov=0.839; evalue=4.61e-11; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994306 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057775335.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057775335.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057775335.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057775335.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057775335.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:47357849 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C29 |
Chr7:47357877 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B45,C19 |
Chr7:47357894 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B79 |
Chr7:47357898 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B102,B41,B85 |
Chr7:47357910 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B102,B31,B41,B89,C17 |
Chr7:47357920 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C68 |
Chr7:47358007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr7:47358031 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C64 |
Chr7:47358042 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr7:47358043 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C50,C58,C64 |
Chr7:47358103 |
G |
A |
EMS_canonical_SNV | stop_gained | 13 | A7,B104,B106,B55,B57,B58,B69,B70,B73,C49,C61,C79,D1 |
Chr7:47358133 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B50,B55,C74,D3 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。