Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003836`

染色体: Chr07 坐标: 47460184-47465820 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003836`
名称	SmilChr07G003836
描述	uncharacterized SmilChr07G003836
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	47460184 - 47465820 / `-`

ID 对照

NCBI Gene ID	`LOC130992833`
GeneID	`130992833`
locus_tag	`-`
NCBI Name	`LOC130992833`
原始查询	`SmilChr07G003836`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Aldolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837776]; symbol=AT1G12230; hit=AT1G12230; species=arabidopsis; confidence=high
产物	Aldolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837776]; symbol=AT1G12230; hit=AT1G12230; species=arabidopsis; confidence=high
Arabidopsis	`AT1G12230` (AT1G12230) Aldolase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837776] identity=68.7; qcov=1.02; evalue=0; confidence=high
Rice	`Os08g0154300` (OJ1066_B03.121-1) - identity=68.5; qcov=0.97; evalue=0; confidence=high
GO	GO:0004801 (transaldolase activity); GO:0005622 (intracellular anatomical structure); GO:0005737 (cytoplasm); GO:0005975 (carbohydrate metabolic process); GO:0006098 (pentose-phosphate shunt)
KEGG	smil00030 (Pentose phosphate pathway - Salvia miltiorrhiza (redroot sage)); smil00710 (Carbon fixation by Calvin cycle - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00923 (TAL_FSA)
InterPro	-
eggNOG	-
NR	GeneID:130992833

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057773580.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057773580.1`
3	Nucleus	细胞核	0.00000	`XP_057773580.1`
4	Chromosome	染色体	0.00000	`XP_057773580.1`
5	Centromere	着丝粒	0.00000	`XP_057773580.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:47460442`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr7:47461265`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A3,B119,C31
`Chr7:47461467`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A14,A8,B3,B81,B88
`Chr7:47462475`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B129,B140,B35,C32,C68
`Chr7:47463326`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B26,B51
`Chr7:47463331`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C43,C81,C87
`Chr7:47463451`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B14,B83,C2,C23,C59
`Chr7:47463493`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B26,B45,C19
`Chr7:47464209`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr7:47465039`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B26,B45,C19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773580.1

397 aa

198

397

TAL_FSA

PF00923 TAL_FSA 109-328 aa

XP_057773581.1

396 aa

198

396

TAL_FSA

PF00923 TAL_FSA 108-327 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773580.1`	Pfam	`PF00923`	TAL_FSA	Domain	109	328	7.6e-45	154.2	Transaldolase/Fructose-6-phosphate aldolase
`XP_057773581.1`	Pfam	`PF00923`	TAL_FSA	Domain	108	327	7.5e-45	154.2	Transaldolase/Fructose-6-phosphate aldolase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917598.1
AATTTAAATTTGAAAAATGGTTAATGTGGTTATCATTGCCGTCCCAATTGTAGCTGCCGTGGGAGCAATCACTTTCATCCCAAAATCTGATAAATCCACTTTGTCTCTCTCAGTATATATTTGACACTAACTTCGTTTCTGAGTGATCTAAGCTTATTTTGCAATTAAAAAATGTCAGCTACATTGCATTCTCCGCTGTCTTCCTCTGCCATGCCCTCTCTCCAGGAGAGACGATTTTTAGGATTCACAGCTCAATCCGC...

XM_057917597.1
ATCATTGCCGTCCCAATTGTAGCTGCCGTGGGAGCAATCACTTTCATCCCAAAATCTGATAAATCCACTTTGTCTCTCTCAGTATATATTTGACACTAACTTCGTTTCTGAGTGATCTAAGCTTATTTTGCAATTAAAAAATGTCAGCTACATTGCATTCTCCGCTGTCTTCCTCTGCCATGCCCTCTCTCCAGCAGGAGAGACGATTTTTAGGATTCACAGCTCAATCCGCGAAGCCAAGCTCCGTATTCAAGCATCGG...

CDS

2 records

下载 CDS FASTA

LOC130992833
ATGTCAGCTACATTGCATTCTCCGCTGTCTTCCTCTGCCATGCCCTCTCTCCAGGAGAGACGATTTTTAGGATTCACAGCTCAATCCGCGAAGCCAAGCTCCGTATTCAAGCATCGGAGAATATTTTCTTCAATTCGAGCTTCTTCTAGCTCCTCTTCGTCTCTTGATGCTGGTTTAAGCACTGAACTAGATGTGGTGACGGGTTACAGCGAGATCGTTCCCGACACTGTTGTTTTCGATGATTTTGAGAGGTTTCCTCC...

LOC130992833
ATGTCAGCTACATTGCATTCTCCGCTGTCTTCCTCTGCCATGCCCTCTCTCCAGCAGGAGAGACGATTTTTAGGATTCACAGCTCAATCCGCGAAGCCAAGCTCCGTATTCAAGCATCGGAGAATATTTTCTTCAATTCGAGCTTCTTCTAGCTCCTCTTCGTCTCTTGATGCTGGTTTAAGCACTGAACTAGATGTGGTGACGGGTTACAGCGAGATCGTTCCCGACACTGTTGTTTTCGATGATTTTGAGAGGTTTCC...

Protein

2 records

下载 Protein FASTA

XP_057773580.1
MSATLHSPLSSSAMPSLQQERRFLGFTAQSAKPSSVFKHRRIFSSIRASSSSSSSLDAGLSTELDVVTGYSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTKFKSAVDTALASSECYTLEKSDDRMSCFFDKALVNVGGDLAKLVPGRVSTEVDARLAYDTHGIVRKVHDLLKLYNEIGVSPERLLFKIPSTWQGIEASRLLELEGVQTHMTFVYSFVQAAAAAQAGASVIQIFVGRLRDWARNHTGDLEVEAA...

XP_057773581.1
MSATLHSPLSSSAMPSLQERRFLGFTAQSAKPSSVFKHRRIFSSIRASSSSSSSLDAGLSTELDVVTGYSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTKFKSAVDTALASSECYTLEKSDDRMSCFFDKALVNVGGDLAKLVPGRVSTEVDARLAYDTHGIVRKVHDLLKLYNEIGVSPERLLFKIPSTWQGIEASRLLELEGVQTHMTFVYSFVQAAAAAQAGASVIQIFVGRLRDWARNHTGDLEVEAAL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器