Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003869`

染色体: Chr07 坐标: 48152763-48168781 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003869`
名称	SmilChr07G003869
描述	vesicle-associated protein 2-1
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	48152763 - 48168781 / `+`

ID 对照

NCBI Gene ID	`LOC130994578`
GeneID	`130994578`
locus_tag	`-`
NCBI Name	`LOC130994578`
原始查询	`SmilChr07G003869`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	vesicle-associated protein 2-1
产物	vesicle-associated protein 2-1
Arabidopsis	`AT5G47180` (AT5G47180) Plant VAMP (vesicle-associated membrane protein) family protein [Source:NCBI gene (formerly Entrezgene);Acc:834764] identity=63.8; qcov=0.946; evalue=8.38e-79; confidence=high
Rice	`Os10g0549100` (OSJNBa0082M15.17) - identity=51.6; qcov=1.01; evalue=8.57e-63; confidence=high
GO	GO:0005789 (endoplasmic reticulum membrane); GO:0005886 (plasma membrane); GO:0061817 (GO:0061817); GO:0090158 (endoplasmic reticulum membrane organization)
KEGG	-
Pfam	PF00635 (Motile_Sperm)
InterPro	-
eggNOG	-
NR	GeneID:130994578

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057775602.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057775603.1`
3	Cytosol	细胞质基质	0.80000	`XP_057775604.1`
4	Cytoplasm	细胞质	0.60000	`XP_057775604.1`
5	Lipid droplet	脂滴	0.20000	`XP_057775602.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:48153600`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C21,C22,C47,C76
`Chr7:48156275`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr7:48156285`	`C`	`CA`	1bp_insertion	frameshift_variant	1	B76
`Chr7:48156285`	`C`	`CA`	1bp_insertion	CDS_variant	1	B76
`Chr7:48156331`	`TGG`	`T`	2bp_deletion	frameshift_variant	1	A3
`Chr7:48156331`	`TGG`	`T`	2bp_deletion	CDS_variant	1	A3
`Chr7:48165170`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B65,B67,D6
`Chr7:48165193`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B46,C20,D10
`Chr7:48165248`	`C`	`T`	EMS_canonical_SNV	stop_gained	66	A10,A11,A2,A21,A25,A4,B1,B102,B105,B106,B109,B115,B123,B128,B129,B135,B137,B19,B20,B22,B24,B28,B29,B30,B32,B33,B36,B38,B39,B42,B43,B52,B54,B60,B62,B64,B74,B77,B86,B87,B9,B90,B91,B92,B97,B98,C1,C14,C15,C19,C2,C26,C45,C53,C55,C61,C62,C63,C65,C74,C76,C8,C80,C82,C85,D3
`Chr7:48165318`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B65,D6
`Chr7:48165319`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,C21,C22,C76
`Chr7:48165333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B46,C20

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775602.1

244 aa

122

244

Motile_Sperm

PF00635 Motile_Sperm 11-104 aa

XP_057775603.1

208 aa

104

208

Motile_Sperm

PF00635 Motile_Sperm 11-104 aa

XP_057775604.1

184 aa

184

Motile_Sperm

PF00635 Motile_Sperm 11-104 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775602.1`	Pfam	`PF00635`	Motile_Sperm	Domain	11	104	4.2e-27	94.9	MSP (Major sperm protein) domain
`XP_057775603.1`	Pfam	`PF00635`	Motile_Sperm	Domain	11	104	2.9e-27	95.4	MSP (Major sperm protein) domain
`XP_057775604.1`	Pfam	`PF00635`	Motile_Sperm	Domain	11	104	1.7e-27	96.1	MSP (Major sperm protein) domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057919619.1
CGTAAAGTTGTACAGTACGTCTCTCTCTTGGGATGCCTATATCCATCTTTCTCAAAATAGTTTTCATTTCTATTGAAGGTTCTCATCTTTCTCGAGTGTTTATCAAAAGTGAGAGACATATATATATTTACATAGGATTTTGATTTGATTCATAGCTAGGATTTGGAATTTCATTGTAGTCTGCTACCATGACAATTGCTGCTCGCCCATTGATTTGTGTACAACCAGAAGACCTCAAATTTCAATTTGAGCTGGATAAA...

XM_057919621.1
GTAAAGTTGTACAGTACGTCTCTCTCTTGGGATGCCTATATCCATCTTTCTCAAAATAGTTTTCATTTCTATTGAAGGTTCTCATCTTTCTCGAGTGTTTATCAAAAGTGAGAGACATATATATATTTACATAGGATTTTGATTTGATTCATAGCTAGGATTTGGAATTTCATTGTAGTCTGCTACCATGACAATTGCTGCTCGCCCATTGATTTGTGTACAACCAGAAGACCTCAAATTTCAATTTGAGCTGGATAAAC...

CDS

3 records

下载 CDS FASTA

LOC130994578
ATGACAATTGCTGCTCGCCCATTGATTTGTGTACAACCAGAAGACCTCAAATTTCAATTTGAGCTGGATAAACAAAGTTATTGTGACCTTAAAGTTACAAACAACACAGAGCATCATGTTGCATTTAAGGTAAAAACTACATCTCCAAAGAAGTATTTTGTGCGACCAAACACAGGTGTGATGCAGCCATGGGACTCTTGCCTTGTAAGAGTGACCCTTCACATTCAACGAGAATACCCTCCTAATATGCAATGCAAAGA...

Protein

3 records

下载 Protein FASTA

XP_057775602.1
MTIAARPLICVQPEDLKFQFELDKQSYCDLKVTNNTEHHVAFKVKTTSPKKYFVRPNTGVMQPWDSCLVRVTLHIQREYPPNMQCKDKFLVQSTIVPPITNVDELPQDTFNKEVGDTLQECKLRVIYVREQDGLGRNSGANGVLQRLRDERDAAVSQSQKLQQDLVSTLPKQNSTFLFFKGRLGYFYLLYYFLRPILIASFSFLRCPSRIGSFSILSKKMYLIGVDHTTFFLKSMFLNFCAQKK

XP_057775603.1
MTIAARPLICVQPEDLKFQFELDKQSYCDLKVTNNTEHHVAFKVKTTSPKKYFVRPNTGVMQPWDSCLVRVTLHIQREYPPNMQCKDKFLVQSTIVPPITNVDELPQDTFNKEVGDTLQECKLRVIYVREQDGLGRNSGANGVLQRLRDERDAAVSQSQKLQQDLEIYKRRRSRKNNYGLSVKFTLLVGLIGMAMGFLLNFLSSEPSQ

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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