当前解析结果
SmilChr07G003887| 统一新 Gene ID | SmilChr07G003887 |
|---|---|
| 名称 | SmilChr07G003887 |
| 描述 | kinesin-like protein KIN-UB |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 48633179 - 48648354 / - |
| NCBI Gene ID | LOC130994590 |
|---|---|
| GeneID | 130994590 |
| locus_tag | - |
| NCBI Name | LOC130994590 |
| 原始查询 | SmilChr07G003887 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-UB |
| 产物 | kinesin-like protein KIN-UB |
| Arabidopsis | AT1G12430 (ARK3)armadillo repeat kinesin 3 [Source:NCBI gene (formerly Entrezgene);Acc:837799] identity=69.7; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0152900 (KINUA)- identity=51.3; qcov=0.982; evalue=0; confidence=high |
| GO | GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding) |
| KEGG | - |
| Pfam | PF00225 (Kinesin); PF00514 (Arm); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994590 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057775619.1 |
| 2 | Phragmoplast | Phragmoplast | 1.00000 | XP_057775619.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057775619.1 |
| 4 | Spindle | Spindle | 0.20000 | XP_057775620.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057775619.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:48633536 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr7:48633596 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr7:48633807 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C70 |
Chr7:48634157 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
Chr7:48634264 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B71,C46,C48 |
Chr7:48636014 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B140,B35,D10,D11 |
Chr7:48637594 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A23,B120,B59,C36,C59 |
Chr7:48638392 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B21,C26 |
Chr7:48638416 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B101,B106,B24,B53,D5 |
Chr7:48639194 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr7:48645043 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,C26,C41 |
Chr7:48646123 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B140,B35,D10,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775619.1PF16796
Microtub_bd 65-210 aa
PF00225
Kinesin 73-410 aa
PF00514
Arm 688-725 aa
XP_057775620.1PF16796
Microtub_bd 66-208 aa
PF00225
Kinesin 71-408 aa
PF00514
Arm 686-723 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775619.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 65 | 210 | 1.6e-17 | 64.6 | Microtubule binding |
XP_057775619.1 |
Pfam | PF00225 |
Kinesin | Domain | 73 | 410 | 4e-97 | 325.8 | Kinesin motor domain |
XP_057775619.1 |
Pfam | PF00514 |
Arm | Repeat | 688 | 725 | 2.1e-18 | 66.3 | Armadillo/beta-catenin-like repeat |
XP_057775620.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 66 | 208 | 1.7e-16 | 61.2 | Microtubule binding |
XP_057775620.1 |
Pfam | PF00225 |
Kinesin | Domain | 71 | 408 | 4.2e-97 | 325.8 | Kinesin motor domain |
XP_057775620.1 |
Pfam | PF00514 |
Arm | Repeat | 686 | 723 | 2.1e-18 | 66.4 | Armadillo/beta-catenin-like repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。