当前解析结果
SmilChr07G003894| 统一新 Gene ID | SmilChr07G003894 |
|---|---|
| 名称 | SmilChr07G003894 |
| 描述 | sucrose nonfermenting 4-like protein |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 48911023 - 48913395 / - |
| NCBI Gene ID | LOC130994596 |
|---|---|
| GeneID | 130994596 |
| locus_tag | - |
| NCBI Name | LOC130994596 |
| 原始查询 | SmilChr07G003894 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | sucrose nonfermenting 4-like protein |
| 产物 | sucrose nonfermenting 4-like protein |
| Arabidopsis | AT1G09020 (SNF4)sucrose nonfermenting-like protein [Source:NCBI gene (formerly Entrezgene);Acc:837423] identity=59.1; qcov=0.946; evalue=4.95e-29; confidence=medium |
| Rice | Os03g0856400 (OsCBSX8)- identity=60.6; qcov=0.71; evalue=5.4e-25; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994596 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057775629.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057775629.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057775629.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775629.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775629.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:48911333 |
CCA |
C |
2bp_deletion | frameshift_variant | 10 | A20,B106,B118,B52,C12,C15,C51,C54,C67,D1 |
Chr7:48911342 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr7:48911367 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr7:48911369 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr7:48911383 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B138,B67 |
Chr7:48911733 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr7:48911749 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr7:48911760 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B106 |
Chr7:48911760 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B106 |
Chr7:48912059 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B122 |
Chr7:48912059 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B122 |
Chr7:48912079 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B113,B86,C82 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。