Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G003909

染色体: Chr07 坐标: 49286317-49290029 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G003909
名称SmilChr07G003909
描述guard cell S-type anion channel SLAC1
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向49286317 - 49290029 / +

ID 对照

NCBI Gene IDLOC130994612
GeneID130994612
locus_tag-
NCBI NameLOC130994612
原始查询SmilChr07G003909

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述guard cell S-type anion channel SLAC1
产物guard cell S-type anion channel SLAC1
ArabidopsisAT1G12480 (OZS1)
C4-dicarboxylate transporter/malic acid transport protein [Source:NCBI gene (formerly Entrezgene);Acc:837805]
identity=66.6; qcov=0.995; evalue=0; confidence=high
RiceOs04g0574700 (SLAC1)
-
identity=62.6; qcov=1.04; evalue=0; confidence=high
GOGO:0006873 (intracellular monoatomic ion homeostasis); GO:0008308 (voltage-gated monoatomic anion channel activity); GO:0016020 (membrane); GO:0055085 (transmembrane transport); GO:0090332 (stomatal closure)
KEGG-
PfamPF03595 (SLAC1)
InterPro-
eggNOG-
NRGeneID:130994612

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057775650.1
2 Nucleus 细胞核 0.00000 XP_057775650.1
3 Chromosome 染色体 0.00000 XP_057775650.1
4 Centromere 着丝粒 0.00000 XP_057775650.1
5 Chromatin 染色质 0.00000 XP_057775650.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:49286526 AG A 1bp_deletion frameshift_variant 145 A10,A11,A14,A16,A18,A19,A2,A20,A21,A24,A3,A4,A7,A8,A9,B100,B101,B104,B105,B108,B11,B112,B113,B114,B115,B118,B119,B120,B121,B122,B123,B124,B125,B128,B129,B130,B133,B135,B14,B140,B15,B16,B18,B20,B22,B25,B27,B29,B3,B31,B35,B37,B40,B41,B42,B43,B44,B46,B48,B5,B50,B51,B58,B65,B67,B68,B69,B71,B72,B73,B76,B78,B79,B80,B81,B83,B84,B89,B94,B98,C1,C10,C11,C12,C13,C14,C16,C17,C2,C23,C24,C25,C27,C29,C3,C30,C31,C32,C33,C34,C35,C37,C38,C40,C41,C42,C44,C46,C47,C48,C49,C50,C51,C54,C55,C56,C57,C58,C59,C6,C60,C64,C66,C67,C68,C69,C7,C70,C72,C77,C78,C79,C80,C82,C83,C84,C85,C87,C9,D1,D10,D11,D6,D8,D9
Chr7:49286572 C T EMS_canonical_SNV CDS_variant 2 C31,C85
Chr7:49286573 C T EMS_canonical_SNV CDS_variant 1 B115
Chr7:49286586 G A EMS_canonical_SNV CDS_variant 1 C41
Chr7:49286721 C T EMS_canonical_SNV CDS_variant 2 B27,B50
Chr7:49286770 C T EMS_canonical_SNV CDS_variant 2 B123,B19
Chr7:49286978 C T EMS_canonical_SNV CDS_variant 1 D11
Chr7:49288071 C T EMS_canonical_SNV CDS_variant 2 A21,B101
Chr7:49288101 C T EMS_canonical_SNV CDS_variant 1 B64
Chr7:49288224 G A EMS_canonical_SNV CDS_variant 1 C2
Chr7:49288257 G A EMS_canonical_SNV CDS_variant 3 B129,C32,C68
Chr7:49288299 C T EMS_canonical_SNV CDS_variant 2 B33,B61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057775650.1
572 aa
N
1
286
572
SLAC1
C
PF03595 SLAC1 199-504 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057775650.1 Pfam PF03595 SLAC1 Family 199 504 2.7e-44 152.4 Voltage-dependent anion channel

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057919667.1
ACCTTCGAAATAAAAGTCCCTTTGAGTTAATGACCCCTGCATTCTCGTGATCTTGATAGGCCCTTTACAAAGGCGGGCAATGCATGTGAAACAATGTAGAAATTCACTACATTAACTCAAATATGTATAACCAACTCTTCTTTCTTGTCAAAACAATTGAAACAAAATAGCGGCCAAGAAAAATAATGGAGATGAAAGAAACCCCAAGAAGATCTCAAACTGGATTAACACATTTTGTGGATATCCACGAGGTACCCGAG...

CDS

1 records

下载 CDS FASTA
LOC130994612
ATGGAGATGAAAGAAACCCCAAGAAGATCTCAAACTGGATTAACACATTTTGTGGATATCCACGAGGTACCCGAGGAAGACGAGGAGGATGAGGAGGAAGAAGACGAAGACGAACGCAAAGGAAAGAAGGCGGCTGATGAGAAAGAAAAACGAGTTCACAAGGCTATCAACCTCCAAGAAGTGAAGAGAAAGAAGCATAGCTTTAGCCGGCAGGTTTCGCTGGAAACCGGATTTTCTGCGCTGAATGGAAAGAAGACGGA...

Protein

1 records

下载 Protein FASTA
XP_057775650.1
MEMKETPRRSQTGLTHFVDIHEVPEEDEEDEEEEDEDERKGKKAADEKEKRVHKAINLQEVKRKKHSFSRQVSLETGFSALNGKKTESKAALPRSGNSFGGFGSAYRSGGAEERKGDFSIFRTKSSLVRQNSKLPLRKESGNIDSQYNDAPSGVDDSINKSDLPAGRYFAALTGPELDQVKDSEDILLPKDKKWPFLLRFPIGCFGICLGLSSQAILWRALASSPATRFLRIPPVINLAIWLLALTVLVAVSITYALKCV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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