Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003917`

染色体: Chr07 坐标: 49436427-49438601 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003917`
名称	SmilChr07G003917
描述	subtilisin-like protease
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	49436427 - 49438601 / `+`

ID 对照

NCBI Gene ID	`LOC130994328`
GeneID	`130994328`
locus_tag	`-`
NCBI Name	`LOC130994328`
原始查询	`SmilChr07G003917`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	subtilisin-like protease
产物	subtilisin-like protease
Arabidopsis	`AT1G04110` (SDD1) Subtilase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839287] identity=40.4; qcov=1.08; evalue=1.26e-180; confidence=medium
Rice	`Os03g0119300` (OsSub25) - identity=47.2; qcov=1.01; evalue=0; confidence=high
GO	GO:0004252 (serine-type endopeptidase activity); GO:0006508 (proteolysis)
KEGG	-
Pfam	PF00082 (Peptidase_S8); PF02225 (PA); PF05922 (Inhibitor_I9); PF17766 (fn3_6)
InterPro	-
eggNOG	-
NR	GeneID:130994328

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	0.80000	`XP_057775359.1`
2	Cell wall	细胞壁	0.40000	`XP_057775359.1`
3	Vacuole	液泡	0.40000	`XP_057775359.1`
4	Nucleus	细胞核	0.00000	`XP_057775359.1`
5	Chromosome	染色体	0.00000	`XP_057775359.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:49436543`	`T`	`TC`	1bp_insertion	frameshift_variant	1	B47
`Chr7:49436543`	`T`	`TC`	1bp_insertion	CDS_variant	1	B47
`Chr7:49436629`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr7:49436657`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,B140
`Chr7:49436683`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B65,D6
`Chr7:49436730`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B101,B24,B47,B53,D5
`Chr7:49436780`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr7:49436813`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr7:49436840`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B133,B16,B45,C82,D9
`Chr7:49436934`	`AC`	`A`	1bp_deletion	frameshift_variant	126	A10,A11,A13,A18,A19,A2,A20,A21,A24,A3,A6,A7,A9,B1,B10,B100,B105,B107,B108,B110,B112,B114,B120,B121,B124,B126,B13,B131,B132,B133,B134,B135,B137,B14,B140,B17,B18,B2,B20,B23,B27,B30,B31,B40,B41,B42,B43,B44,B45,B46,B49,B50,B52,B53,B54,B56,B57,B59,B62,B65,B66,B67,B69,B7,B70,B71,B72,B75,B78,B79,B80,B82,B83,B84,B86,B88,B93,B96,B98,B99,C10,C11,C12,C13,C16,C17,C18,C19,C20,C24,C27,C3,C32,C33,C36,C37,C4,C41,C42,C46,C47,C48,C49,C51,C53,C54,C57,C59,C6,C60,C68,C69,C7,C70,C78,C79,C82,C84,C86,C87,D1,D10,D11,D4,D7,D9
`Chr7:49436945`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B140,B35,C37
`Chr7:49436946`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C31,C85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775359.1

724 aa

362

724

Inhibitor_I9

Peptidase_S8

fn3_6

PF05922 Inhibitor_I9 29-95 aa PF00082 Peptidase_S8 119-542 aa PF02225 PA 343-427 aa PF17766 fn3_6 620-719 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775359.1`	Pfam	`PF05922`	Inhibitor_I9	Domain	29	95	2.2e-10	41.8	Peptidase inhibitor I9
`XP_057775359.1`	Pfam	`PF00082`	Peptidase_S8	Domain	119	542	1.7e-41	143.1	Subtilase family
`XP_057775359.1`	Pfam	`PF02225`	PA	Domain	343	427	6.1e-09	36.6	PA domain
`XP_057775359.1`	Pfam	`PF17766`	fn3_6	Domain	620	719	5.3e-29	101.0	Fibronectin type-III domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919376.1
ATGAGTTTCGCAGTTAGTTTTCTACTTCTCTTCTGCATATTCAATTTCGAGCAGTTTGTGAGAGCAGAAACTGATCTAGCGACATACATCGTCCACATCGACCCCCAAATCGACGATCAACATTCATTTTTGGCGACGGCTGTAACCGATGAAGAGCCACGCATTCTTCATCACTACCGCCACGTTTTCTCCGGCTTCGCAGCGAGATTATCAGCAGATGAAGCGAAAGCCATCGAAGGTAAAGACGGCTTCGTCTCGGC...

CDS

1 records

下载 CDS FASTA

LOC130994328
ATGAGTTTCGCAGTTAGTTTTCTACTTCTCTTCTGCATATTCAATTTCGAGCAGTTTGTGAGAGCAGAAACTGATCTAGCGACATACATCGTCCACATCGACCCCCAAATCGACGATCAACATTCATTTTTGGCGACGGCTGTAACCGATGAAGAGCCACGCATTCTTCATCACTACCGCCACGTTTTCTCCGGCTTCGCAGCGAGATTATCAGCAGATGAAGCGAAAGCCATCGAAGGTAAAGACGGCTTCGTCTCGGC...

Protein

1 records

下载 Protein FASTA

XP_057775359.1
MSFAVSFLLLFCIFNFEQFVRAETDLATYIVHIDPQIDDQHSFLATAVTDEEPRILHHYRHVFSGFAARLSADEAKAIEGKDGFVSARRERVYELDTTHTPDFMGLHQNTGFWKASTYGRGVIIGMIDSGITPGHPSFDDEGVPPPPAKWKGDCGFKSAACNNKLIGARTFDAGSETAADEIGHGTVTASTAGGNFVSGASILGSANGTAAGIAPLAHVAVYRVCGPKAGCPESDVLAGIDAAIADGVDVISMSISHPPS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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