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Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.
Examples

Resolved gene

SmilChr07G003919

Chromosome: Chr07 Coordinates: 49474741-49476925 Strand: - Biotype: lncRNA

Basic Information

Standard Gene IDSmilChr07G003919
NameSmilChr07G003919
Descriptionuncharacterized SmilChr07G003919
Chromosome / SeqIDChr07 / NC_080393.1
Coordinates and Strand49474741 - 49476925 / -

ID Mapping

NCBI Gene IDLOC130994618
GeneID130994618
locus_tag-
NCBI NameLOC130994618
Original querySmilChr07G003919

Open ID mapping

Functional Annotation

SourceGFF basic annotation
Descriptionuncharacterized SmilChr07G003919
Productuncharacterized SmilChr07G003919
Arabidopsis-
-
Rice-
-
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130994618

Open annotation module

Subcellular Localization Top 5

Subcellular localization is still building, or no prediction is available for this gene yet.

Open subcellular search

EMS Mutant Variants

No curated EMS CDS / LoF variants are available for this gene yet, or the EMS database is still building.

Open EMS variants

Predicted Protein Domains

This gene has no available Pfam domain hit in the current release.

Open domain search

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA
XR_009091824.1
ACCACTCTGCTCATTTCTACTCTATCAGCAAGAGAAGTTCTCTTACTCATTCCACAAAAACACACTTAAGAGAAAACTCAAAATACATGCTACGGAATTCAAGAGCTCTATTCCATCGATCTACAGCAAACTACCAAGCACAAACCTCCACCTTCACCATTCAATAATTCCCACAAATTTGCTTTGCCGAGTAGCTCAATTTTCAGCATCCAAGCAATTTCATAGCTTTTGAATAGAACGCTCCCAAGGCTTTGTGGACC...

CDS

0 records

CDS or protein sequence does not apply to this noncoding RNA.

Protein

0 records

CDS or protein sequence does not apply to this noncoding RNA.

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

Download upstream Download downstream Download upstream + gene + downstream

JBrowse

Open genome browser