Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003922`

染色体: Chr07 坐标: 49522570-49526791 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003922`
名称	SmilChr07G003922
描述	rust resistance kinase Lr10-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	49522570 - 49526791 / `+`

ID 对照

NCBI Gene ID	`LOC130994621`
GeneID	`130994621`
locus_tag	`-`
NCBI Name	`LOC130994621`
原始查询	`SmilChr07G003922`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	rust resistance kinase Lr10-like
产物	rust resistance kinase Lr10-like
Arabidopsis	`AT1G66920` (AT1G66920) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843010] identity=37.1; qcov=0.891; evalue=3.12e-106; confidence=medium
Rice	`Os01g0115600` (OsRLCK11) - identity=43.5; qcov=0.908; evalue=1.63e-155; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0030247 (polysaccharide binding)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind)
InterPro	-
eggNOG	-
NR	GeneID:130994621

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057775662.1`
2	Nucleus	细胞核	0.00000	`XP_057775662.1`
3	Chromosome	染色体	0.00000	`XP_057775662.1`
4	Centromere	着丝粒	0.00000	`XP_057775662.1`
5	Chromatin	染色质	0.00000	`XP_057775662.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:49522782`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A16,B130,B21,B73,C26
`Chr7:49522838`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B136,B138
`Chr7:49523052`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B118,B125,C30,C64
`Chr7:49523549`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr7:49526100`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C53
`Chr7:49526175`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A6,B61,C81,D2,D8
`Chr7:49526207`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr7:49526305`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:49526696`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B31,B43,B76,C54,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775662.1

654 aa

327

654

GUB_WAK_bind

PK_Tyr_Ser-Thr

Pkinase

PF13947 GUB_WAK_bind 78-142 aa PF07714 PK_Tyr_Ser-Thr 341-611 aa PF00069 Pkinase 342-609 aa

XP_057775663.1

653 aa

326

653

GUB_WAK_bind

PK_Tyr_Ser-Thr

Pkinase

PF13947 GUB_WAK_bind 78-142 aa PF07714 PK_Tyr_Ser-Thr 340-610 aa PF00069 Pkinase 341-608 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775662.1`	Pfam	`PF13947`	GUB_WAK_bind	Domain	78	142	3.7e-16	60.0	Wall-associated receptor kinase galacturonan-binding
`XP_057775662.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	341	611	4.6e-45	154.7	Protein tyrosine and serine/threonine kinase
`XP_057775662.1`	Pfam	`PF00069`	Pkinase	Domain	342	609	8.4e-47	160.5	Protein kinase domain
`XP_057775663.1`	Pfam	`PF13947`	GUB_WAK_bind	Domain	78	142	3.7e-16	60.0	Wall-associated receptor kinase galacturonan-binding
`XP_057775663.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	340	610	4.6e-45	154.7	Protein tyrosine and serine/threonine kinase
`XP_057775663.1`	Pfam	`PF00069`	Pkinase	Domain	341	608	8.5e-47	160.5	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057919679.1
ACTTGTCCGCCTATCATTATGCAGTGTGAGGGTCAAGGAAATTGACAACGGAATGGAAGCATGAAAGTTCTGTTCGGACAGCTCAAGTCAACGTCACAGTCAACTCTTGCATATAAGCAGGACTACCTTCCATTCACAAACATGAATTCATTTCATTTGAGTCCCTCTCCAAATTCTCAGAATTACAAAAATCCAAGCAACAAAATGTCTGCCTTCTTCTTCAACTTCCTCTTCATCGTCTTCGCTTTCTTCTCTCCACT...

XM_057919680.1
TTGACAACGGAATGGAAGCATGAAAGTTCTGTTCGGACAGCTCAAGTCAACGTCACAGTCAACTCTTGCATATAAGCAGGACTACCTTCCATTCACAAACATGAATTCATTTCATTTGAGTCCCTCTCCAAATTCTCAGAATTACAAAAATCCAAGCAACAAAATGTCTGCCTTCTTCTTCAACTTCCTCTTCATCGTCTTCGCTTTCTTCTCTCCACTCCCTTTCGCAGAAGCAGATAACTGTTGGCCCGACAGTTGCC...

CDS

2 records

下载 CDS FASTA

LOC130994621
ATGAAAGTTCTGTTCGGACAGCTCAAGTCAACGTCACAGTCAACTCTTGCATATAAGCAGGACTACCTTCCATTCACAAACATGAATTCATTTCATTTGAGTCCCTCTCCAAATTCTCAGAATTACAAAAATCCAAGCAACAAAATGTCTGCCTTCTTCTTCAACTTCCTCTTCATCGTCTTCGCTTTCTTCTCTCCACTCCCTTTCGCAGAAGCAGATAACTGTTGGCCCGACAGTTGCCGGAGAGGCGGCCCACGGAT...

Protein

2 records

下载 Protein FASTA

XP_057775662.1
MKVLFGQLKSTSQSTLAYKQDYLPFTNMNSFHLSPSPNSQNYKNPSNKMSAFFFNFLFIVFAFFSPLPFAEADNCWPDSCRRGGPRIRFPFRIRNKQSPNCGYPGFDVYCNDKGETMLDLPISVNLTVKRIHYKSQRIDLSDPEKCLGQKLQTLNLSSSPFRFFTDYLEDYVLFSCPDSKRDLSNPVACLRDSRYQFYAVRNDSYMDSVSLTSCTNEHNVSSVPYYVFKKNDVYLNWSEPACGGSCEALGRICAPPNNST...

XP_057775663.1
MKVLFGQLKSTSQSTLAYKQDYLPFTNMNSFHLSPSPNSQNYKNPSNKMSAFFFNFLFIVFAFFSPLPFAEADNCWPDSCRRGGPRIRFPFRIRNKQSPNCGYPGFDVYCNDKGETMLDLPISVNLTVKRIHYKSQRIDLSDPEKCLGQKLQTLNLSSSPFRFFTDYLEDYVLFSCPDSKRDLSNPVACLRDSRYQFYAVRNDSYMDSVSLTSCTNEHNVSSVPYYVFKKNDVYLNWSEPACGGSCEALGRICAPPNNST...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器