当前解析结果
SmilChr07G003941| 统一新 Gene ID | SmilChr07G003941 |
|---|---|
| 名称 | SmilChr07G003941 |
| 描述 | uncharacterized protein At2g29880-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 49786797 - 49787599 / + |
| NCBI Gene ID | LOC130994334 |
|---|---|
| GeneID | 130994334 |
| locus_tag | - |
| NCBI Name | LOC130994334 |
| 原始查询 | SmilChr07G003941 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:817538]; symbol=AT2G29880; hit=AT2G29880; species=arabidopsis; confidence=medium |
| 产物 | Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:817538]; symbol=AT2G29880; hit=AT2G29880; species=arabidopsis; confidence=medium |
| Arabidopsis | AT2G29880 (AT2G29880)Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:817538] identity=36.3; qcov=1.01; evalue=3.18e-31; confidence=medium |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | PF24769 (At2g29880_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994334 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057775365.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057775365.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057775365.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057775365.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057775365.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:49786860 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
Chr7:49786989 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B33,C85 |
Chr7:49786995 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,B67 |
Chr7:49787027 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:49787045 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B31,B33,B78,C85 |
Chr7:49787067 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B31,B33,B78,C55,C85 |
Chr7:49787079 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B88,C15,C27 |
Chr7:49787099 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,C75 |
Chr7:49787103 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A14,A8,B3 |
Chr7:49787108 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B88,C15 |
Chr7:49787132 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B31 |
Chr7:49787150 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057775365.1PF24769
At2g29880_C 159-204 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775365.1 |
Pfam | PF24769 |
At2g29880_C | Domain | 159 | 204 | 6.9e-21 | 75.1 | At2g29880 C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。