Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003947`

染色体: Chr07 坐标: 49906672-49913349 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003947`
名称	SmilChr07G003947
描述	phospholipase D beta 1-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	49906672 - 49913349 / `+`

ID 对照

NCBI Gene ID	`LOC130994642`
GeneID	`130994642`
locus_tag	`-`
NCBI Name	`LOC130994642`
原始查询	`SmilChr07G003947`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phospholipase D beta 1-like
产物	phospholipase D beta 1-like
Arabidopsis	`AT2G42010` (PLDBETA1) phospholipase D beta 1 [Source:NCBI gene (formerly Entrezgene);Acc:818802] identity=71.7; qcov=0.996; evalue=0; confidence=high
Rice	`Os10g0524400` (OsPLDbeta1) - identity=65.5; qcov=1; evalue=0; confidence=high
GO	GO:0004630 (D-type glycerophospholipase activity); GO:0005509 (calcium ion binding); GO:0005886 (plasma membrane); GO:0009395 (phospholipid catabolic process); GO:0046470 (phosphatidylcholine metabolic process)
KEGG	smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00565 (Ether lipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00168 (C2); PF00614 (PLDc)
InterPro	-
eggNOG	-
NR	GeneID:130994642

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057775686.1`
2	Cytoplasm	细胞质	0.60000	`XP_057775686.1`
3	Vesicle	囊泡	0.60000	`XP_057775686.1`
4	Endosome	内体	0.60000	`XP_057775686.1`
5	Endosome membrane	内体膜	0.40000	`XP_057775686.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:49907533`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C68
`Chr7:49907763`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A15,B102
`Chr7:49907865`	`GT`	`G`	1bp_deletion	frameshift_variant	1	B75
`Chr7:49907865`	`GT`	`G`	1bp_deletion	CDS_variant	1	B75
`Chr7:49907957`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B20,B48
`Chr7:49908046`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B8
`Chr7:49908046`	`TC`	`T`	1bp_deletion	CDS_variant	1	B8
`Chr7:49908386`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A2,B54,B67,C30
`Chr7:49909185`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B126,B44,C60
`Chr7:49909511`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A19,B125,C41
`Chr7:49909871`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B1,B17,B80,B86
`Chr7:49910026`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B125

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775686.1

850 aa

425

850

PLDc

PF00168 C2 39-164 aa PF00614 PLDc 256-839 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775686.1`	Pfam	`PF00168`	C2	Domain	39	164	1.1e-15	58.4	C2 domain
`XP_057775686.1`	Pfam	`PF00614`	PLDc	Domain	256	839	2.5e-220	733.3	Phospholipase D

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919703.1
AAGCTTCCAACGACTATATCCAGAAATGGGAAAAGTGGCGTAAATCTATCGATACGGCCGCCATTCAAGAATAGGTGTGGGCAAATGAAAGTGGCCCCCCATTTCCTCCCTTCTCGAAACCCGCCGGCGATGCTGTCCTTTTCTAGCCCAAGTCTAGTCCACCCTTTTTCTTATTTTTTTACGAAACCAACGAGGAGAAATTATCTATCAATTTTCAAGATTGGCCTCTACTTCTCAAAAAGTCACCATTGGGCAGCTAT...

CDS

1 records

下载 CDS FASTA

LOC130994642
ATGGCTCACTTAAGTTACTCTGATTCAATGTCTGGGAGCTCGCATCATGGACAAGGCATGCAGTTTGTGCCGTTTAAGACCTCGACAGGGTCACTTAGGGTGTTGTTATTGCACGGGAATTTGGATATTTGGGTGAGAGAGGCCAAGAATCTCCCAAATATGGATTTGTTCCACAAGAACTTAGGTGATATGTTTGGGAGGTTGTCTGGGAAGTTCTTGAGTAAAGTGGAAGGCACAGCGCCTGTCAAGATCACGAGTGA...

Protein

1 records

下载 Protein FASTA

XP_057775686.1
MAHLSYSDSMSGSSHHGQGMQFVPFKTSTGSLRVLLLHGNLDIWVREAKNLPNMDLFHKNLGDMFGRLSGKFLSKVEGTAPVKITSDPYVTIAVSNAVIGRTFVISNSENPVWSQHFHLPVAHYGAEVHFVVKDSDVVGSQIIGAVGIPVEQVISGVLIEGTFPILAANGKQCNPGAVLTLSIQYIPMERVPLYHGGVGGDLSYKGVPGTYFPLRRGGKVTLYQDAHADDASLPKLWLANGWFYQHGHCWHDIYDAICQA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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