当前解析结果
SmilChr07G003956| 统一新 Gene ID | SmilChr07G003956 |
|---|---|
| 名称 | SmilChr07G003956 |
| 描述 | phospholipase D beta 1-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 50148667 - 50156310 / + |
| NCBI Gene ID | LOC130994651 |
|---|---|
| GeneID | 130994651 |
| locus_tag | - |
| NCBI Name | LOC130994651 |
| 原始查询 | SmilChr07G003956 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phospholipase D beta 1-like |
| 产物 | phospholipase D beta 1-like |
| Arabidopsis | AT2G42010 (PLDBETA1)phospholipase D beta 1 [Source:NCBI gene (formerly Entrezgene);Acc:818802] identity=71.8; qcov=0.996; evalue=0; confidence=high |
| Rice | Os10g0524400 (OsPLDbeta1)- identity=65.7; qcov=1; evalue=0; confidence=high |
| GO | GO:0004630 (D-type glycerophospholipase activity); GO:0005509 (calcium ion binding); GO:0005886 (plasma membrane); GO:0009395 (phospholipid catabolic process); GO:0046470 (phosphatidylcholine metabolic process) |
| KEGG | smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00565 (Ether lipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00168 (C2); PF00614 (PLDc) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994651 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057775696.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057775696.1 |
| 3 | Vesicle | 囊泡 | 0.60000 | XP_057775696.1 |
| 4 | Endosome | 内体 | 0.60000 | XP_057775696.1 |
| 5 | Endosome membrane | 内体膜 | 0.40000 | XP_057775696.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:50149588 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C5,D1 |
Chr7:50149755 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B85,D6 |
Chr7:50149910 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B48,B64,C17,C84 |
Chr7:50150278 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B129,B26,B37 |
Chr7:50151429 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A19,B125,C41 |
Chr7:50151651 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr7:50151747 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B110,C24,C42,C52 |
Chr7:50151773 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B115 |
Chr7:50151944 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A19,B104,B125,C41 |
Chr7:50151945 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
Chr7:50155511 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr7:50155558 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B113,C29 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775696.1PF00168
C2 39-164 aa
PF00614
PLDc 256-839 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775696.1 |
Pfam | PF00168 |
C2 | Domain | 39 | 164 | 1.1e-15 | 58.4 | C2 domain |
XP_057775696.1 |
Pfam | PF00614 |
PLDc | Domain | 256 | 839 | 1.1e-220 | 734.5 | Phospholipase D |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。