当前解析结果
SmilChr07G003962| 统一新 Gene ID | SmilChr07G003962 |
|---|---|
| 名称 | SmilChr07G003962 |
| 描述 | (+)-borneol dehydrogenase 2 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 50313285 - 50316920 / - |
| NCBI Gene ID | LOC130994657 |
|---|---|
| GeneID | 130994657 |
| locus_tag | - |
| NCBI Name | LOC130994657 |
| 原始查询 | SmilChr07G003962 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | (+)-borneol dehydrogenase 2 |
| 产物 | (+)-borneol dehydrogenase 2 |
| Arabidopsis | AT1G52340 (ABA2)NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841665] identity=67.7; qcov=1.01; evalue=3.49e-136; confidence=high |
| Rice | Os03g0810800 (OsABA2)- identity=65.4; qcov=0.943; evalue=2.58e-129; confidence=high |
| GO | GO:0005829 (cytosol); GO:0009688 (abscisic acid biosynthetic process); GO:0010301 (xanthoxin dehydrogenase (NAD+) activity) |
| KEGG | smil00906 (Carotenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00106 (adh_short); PF08659 (KR); PF13561 (adh_short_C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994657 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Peroxisome | 过氧化物酶体 | 0.80000 | XP_057775701.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057775701.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057775701.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057775701.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057775701.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:50313482 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B85,D6 |
Chr7:50313716 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B26,C59,C82 |
Chr7:50313725 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C5,D1 |
Chr7:50313776 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B127,B68 |
Chr7:50313782 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B35,C37,C48 |
Chr7:50313897 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:50313901 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B11,C3 |
Chr7:50313932 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr7:50313933 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr7:50314012 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C5,D1 |
Chr7:50314014 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B117,B2 |
Chr7:50314063 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775701.1PF00106
adh_short 21-208 aa
PF08659
KR 23-180 aa
PF13561
adh_short_C2 30-272 aa
XP_057775702.1PF00106
adh_short 21-208 aa
PF08659
KR 23-180 aa
PF13561
adh_short_C2 30-272 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775701.1 |
Pfam | PF00106 |
adh_short | Domain | 21 | 208 | 2.7e-52 | 177.8 | short chain dehydrogenase |
XP_057775701.1 |
Pfam | PF08659 |
KR | Family | 23 | 180 | 4.9e-08 | 33.8 | KR domain |
XP_057775701.1 |
Pfam | PF13561 |
adh_short_C2 | Domain | 30 | 272 | 1.4e-62 | 212.1 | Enoyl-(Acyl carrier protein) reductase |
XP_057775702.1 |
Pfam | PF00106 |
adh_short | Domain | 21 | 208 | 2.7e-52 | 177.8 | short chain dehydrogenase |
XP_057775702.1 |
Pfam | PF08659 |
KR | Family | 23 | 180 | 4.9e-08 | 33.8 | KR domain |
XP_057775702.1 |
Pfam | PF13561 |
adh_short_C2 | Domain | 30 | 272 | 1.4e-62 | 212.1 | Enoyl-(Acyl carrier protein) reductase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。