当前解析结果
SmilChr07G003970| 统一新 Gene ID | SmilChr07G003970 |
|---|---|
| 名称 | SmilChr07G003970 |
| 描述 | malate synthase, glyoxysomal-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 50542192 - 50544765 / - |
| NCBI Gene ID | LOC130994342 |
|---|---|
| GeneID | 130994342 |
| locus_tag | - |
| NCBI Name | LOC130994342 |
| 原始查询 | SmilChr07G003970 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | malate synthase, glyoxysomal-like |
| 产物 | malate synthase%2C glyoxysomal-like |
| Arabidopsis | AT5G03860 (MLS)malate synthase [Source:NCBI gene (formerly Entrezgene);Acc:831690] identity=66.3; qcov=1.02; evalue=0; confidence=high |
| Rice | Os04g0486950 (MS)- identity=63.2; qcov=1.05; evalue=0; confidence=high |
| GO | GO:0004474 (malate synthase activity); GO:0005737 (cytoplasm); GO:0006097 (glyoxylate cycle) |
| KEGG | smil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01274 (MS_TIM-barrel); PF20656 (MS_N); PF20659 (MS_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994342 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057775372.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057775372.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057775372.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775372.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775372.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:50542203 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B94,C27,C54,C9 |
Chr7:50542228 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B42,C48,D1 |
Chr7:50542296 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr7:50542319 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,C27 |
Chr7:50542328 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B34 |
Chr7:50542330 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A10,B140,B94 |
Chr7:50542336 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A16,A4,B83 |
Chr7:50542346 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr7:50542381 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B121,C62 |
Chr7:50542396 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,B65 |
Chr7:50542473 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B85,D6 |
Chr7:50542491 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775372.1PF20656
MS_N 13-76 aa
PF01274
MS_TIM-barrel 167-390 aa
PF20659
MS_C 399-507 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775372.1 |
Pfam | PF20656 |
MS_N | Domain | 13 | 76 | 2.1e-17 | 63.1 | Malate synthase, N-terminal domain |
XP_057775372.1 |
Pfam | PF01274 |
MS_TIM-barrel | Domain | 167 | 390 | 1.5e-86 | 290.2 | Malate synthase, TIM barrel domain |
XP_057775372.1 |
Pfam | PF20659 |
MS_C | Domain | 399 | 507 | 1.6e-21 | 77.6 | Malate synthase, C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。