Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003985`

染色体: Chr07 坐标: 50858567-50865927 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003985`
名称	SmilChr07G003985
描述	plant UBX domain-containing protein 8
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	50858567 - 50865927 / `-`

ID 对照

NCBI Gene ID	`LOC130994674`
GeneID	`130994674`
locus_tag	`-`
NCBI Name	`LOC130994674`
原始查询	`SmilChr07G003985`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	plant UBX domain-containing protein 8
产物	plant UBX domain-containing protein 8
Arabidopsis	`AT4G11740` (SAY1) Ubiquitin-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826779] identity=53; qcov=1.03; evalue=8.56e-158; confidence=high
Rice	`Os08g0546400` - identity=49; qcov=1.03; evalue=3.65e-149; confidence=high
GO	GO:0043130 (ubiquitin binding)
KEGG	-
Pfam	PF00789 (UBX); PF14555 (UBA_4)
InterPro	-
eggNOG	-
NR	GeneID:130994674

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057775728.1`
2	Cytosol	细胞质基质	1.00000	`XP_057775728.1`
3	Nucleus	细胞核	0.40000	`XP_057775728.1`
4	Vesicle	囊泡	0.20000	`XP_057775728.1`
5	Endosome	内体	0.20000	`XP_057775728.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:50858948`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr7:50861534`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A21,B101
`Chr7:50861795`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B105,B54,B94,C15
`Chr7:50861809`	`TTA`	`T`	2bp_deletion	frameshift_variant	164	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A23,A3,A4,A6,A7,A9,B1,B100,B103,B104,B105,B106,B107,B108,B11,B111,B113,B114,B117,B118,B119,B12,B121,B122,B123,B124,B126,B127,B129,B13,B131,B134,B135,B136,B137,B138,B140,B17,B18,B2,B26,B27,B28,B3,B31,B33,B34,B35,B36,B37,B38,B39,B42,B43,B45,B47,B49,B5,B50,B53,B54,B56,B57,B58,B59,B6,B60,B61,B64,B66,B69,B7,B71,B73,B76,B77,B79,B80,B81,B83,B84,B85,B86,B87,B88,B89,B90,B91,B92,B94,B95,B96,B97,C1,C11,C12,C14,C15,C16,C18,C21,C23,C24,C25,C28,C3,C30,C32,C33,C34,C37,C38,C39,C4,C42,C44,C45,C48,C5,C50,C52,C53,C54,C55,C56,C57,C58,C61,C62,C63,C66,C67,C68,C7,C71,C72,C73,C74,C77,C78,C8,C81,C83,C84,C86,C9,D11,D2,D3,D5,D6,D7,D8
`Chr7:50861825`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B54,B94,C15,C16
`Chr7:50861837`	`CA`	`C`	1bp_deletion	frameshift_variant	110	A10,A11,A13,A2,A23,A8,A9,B10,B100,B103,B105,B106,B107,B111,B114,B117,B118,B119,B121,B122,B123,B126,B127,B129,B13,B131,B132,B134,B135,B136,B137,B140,B18,B19,B2,B21,B25,B27,B31,B33,B34,B35,B36,B38,B39,B41,B42,B43,B5,B50,B53,B54,B56,B59,B6,B60,B63,B66,B69,B72,B73,B76,B77,B82,B83,B85,B86,B87,B88,B89,B91,B92,B94,B96,C1,C11,C12,C15,C16,C24,C25,C28,C3,C33,C34,C37,C4,C40,C41,C44,C5,C50,C52,C54,C56,C57,C58,C61,C62,C64,C67,C71,C77,C83,C84,C86,C9,D11,D7,D8
`Chr7:50861892`	`A`	`AT`	1bp_insertion	frameshift_variant	1	B36
`Chr7:50861892`	`A`	`AT`	1bp_insertion	CDS_variant	1	B36
`Chr7:50862088`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr7:50862145`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B132,B7,B76
`Chr7:50862149`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr7:50862414`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A14,A8,B3,B81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775728.1

585 aa

292

585

UBA_4

UBX

PF14555 UBA_4 5-46 aa PF00789 UBX 504-583 aa

XP_057775729.1

585 aa

292

585

UBA_4

UBX

PF14555 UBA_4 5-46 aa PF00789 UBX 504-583 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775728.1`	Pfam	`PF14555`	UBA_4	Domain	5	46	2.1e-13	50.5	UBA-like domain
`XP_057775728.1`	Pfam	`PF00789`	UBX	Domain	504	583	4.5e-19	69.1	UBX domain
`XP_057775729.1`	Pfam	`PF14555`	UBA_4	Domain	5	46	2.1e-13	50.5	UBA-like domain
`XP_057775729.1`	Pfam	`PF00789`	UBX	Domain	504	583	4.5e-19	69.1	UBX domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057919746.1
GTGGAAGTTTAGAACACTATAGAAGGAGTCAGGAACCTATCAAATTCTCTTTTCTTCCCAAACTACCCCTCGATCGGTGCCAAAATTACAGCTCAGTCCACACGAAATAAGAATTAATCAGGAAAAATGGCGACTGATCAAGAAGCTATTGAAACGTTCATGAGCATTACCGGCGTCGATGAAGCCACCGCTATACAAAAGCTCGAGGAGCATTTGGGAAACCTCAACGAAGCTGTCAATGCCCATTTTACCGAAGGGGA...

XM_057919745.1
GCCATATTTCTTCTCAAATTTACGAAAAAGAAATATAACTATCGCACAAAATTTAGTTCTCACGCAAACTCTGTTTCCATTTTCCTCCAATTTGCAGGAAATAAGAATTAATCAGGAAAAATGGCGACTGATCAAGAAGCTATTGAAACGTTCATGAGCATTACCGGCGTCGATGAAGCCACCGCTATACAAAAGCTCGAGGAGCATTTGGGAAACCTCAACGAAGCTGTCAATGCCCATTTTACCGAAGGGGACAGAAA...

CDS

2 records

下载 CDS FASTA

LOC130994674
ATGGCGACTGATCAAGAAGCTATTGAAACGTTCATGAGCATTACCGGCGTCGATGAAGCCACCGCTATACAAAAGCTCGAGGAGCATTTGGGAAACCTCAACGAAGCTGTCAATGCCCATTTTACCGAAGGGGACAGAAACCTAACTCAACAGACATCTTTTACATCTTCTCGAGCTGAAGACATGGATATAGATGATCCTATGCCATTTGAGTCCCATAGACCTCCACCGTCCTTATTACCATTTGGGAGAGACTTAAA...

Protein

2 records

下载 Protein FASTA

XP_057775728.1
MATDQEAIETFMSITGVDEATAIQKLEEHLGNLNEAVNAHFTEGDRNLTQQTSFTSSRAEDMDIDDPMPFESHRPPPSLLPFGRDLNPFSLLDPNFTRSIFDRGDASNRSPFVSHPREVREIPIEVKDETGATGRSVGAPIIEDVTGSTREHGTEEHGTVIIDDEDDDKTFPTLPTTRATAHGIGYSSRFSEPSAPTTVDMPDYGNDIEEEMIRAAIEASKHEAGMSSQDVMDPASAPIQSHPEDAEIAHVVSLSLQTAE...

XP_057775729.1
MATDQEAIETFMSITGVDEATAIQKLEEHLGNLNEAVNAHFTEGDRNLTQQTSFTSSRAEDMDIDDPMPFESHRPPPSLLPFGRDLNPFSLLDPNFTRSIFDRGDASNRSPFVSHPREVREIPIEVKDETGATGRSVGAPIIEDVTGSTREHGTEEHGTVIIDDEDDDKTFPTLPTTRATAHGIGYSSRFSEPSAPTTVDMPDYGNDIEEEMIRAAIEASKHEAGMSSQDVMDPASAPIQSHPEDAEIAHVVSLSLQTAE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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