当前解析结果
SmilChr07G003987| 统一新 Gene ID | SmilChr07G003987 |
|---|---|
| 名称 | SmilChr07G003987 |
| 描述 | uncharacterized SmilChr07G003987 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 50913277 - 50920626 / + |
| NCBI Gene ID | LOC130994677 |
|---|---|
| GeneID | 130994677 |
| locus_tag | - |
| NCBI Name | LOC130994677 |
| 原始查询 | SmilChr07G003987 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GPI transamidase subunit PIG-U [Source:NCBI gene (formerly Entrezgene);Acc:842615]; symbol=AT1G63110; hit=AT1G63110; species=arabidopsis; confidence=high |
| 产物 | GPI transamidase subunit PIG-U [Source:NCBI gene (formerly Entrezgene);Acc:842615]; symbol=AT1G63110; hit=AT1G63110; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G63110 (AT1G63110)GPI transamidase subunit PIG-U [Source:NCBI gene (formerly Entrezgene);Acc:842615] identity=68.9; qcov=0.957; evalue=0; confidence=high |
| Rice | Os02g0688900- identity=62.8; qcov=0.972; evalue=0; confidence=high |
| GO | GO:0016020 (membrane); GO:0016255 (attachment of GPI anchor to protein); GO:0034394 (protein localization to cell surface); GO:0042765 (GPI-anchor transamidase complex) |
| KEGG | smil00563 (Glycosylphosphatidylinositol (GPI)-anchor biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF06728 (PIG-U) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994677 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057775730.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057775730.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057775730.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775730.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775730.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:50913399 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B132,B76 |
Chr7:50913486 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B21,B65,B67,C26,C77 |
Chr7:50913718 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr7:50916171 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B101,B24,B53,D5 |
Chr7:50916397 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A24,B94,C58,C80 |
Chr7:50916413 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr7:50916958 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C77 |
Chr7:50916958 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C77 |
Chr7:50916959 |
A |
ATT |
2bp_insertion | frameshift_variant | 4 | A24,B94,C58,C80 |
Chr7:50916959 |
A |
ATT |
2bp_insertion | CDS_variant | 4 | A24,B94,C58,C80 |
Chr7:50916960 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | B115 |
Chr7:50916960 |
AT |
A |
1bp_deletion | CDS_variant | 1 | B115 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775730.1PF06728
PIG-U 22-438 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775730.1 |
Pfam | PF06728 |
PIG-U | Family | 22 | 438 | 1.4e-105 | 354.2 | GPI transamidase subunit PIG-U |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。