当前解析结果
SmilChr07G004007| 统一新 Gene ID | SmilChr07G004007 |
|---|---|
| 名称 | SmilChr07G004007 |
| 描述 | uncharacterized SmilChr07G004007 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 51115950 - 51116687 / - |
| NCBI Gene ID | LOC130994354 |
|---|---|
| GeneID | 130994354 |
| locus_tag | - |
| NCBI Name | LOC130994354 |
| 原始查询 | SmilChr07G004007 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low |
| 产物 | DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G47680 (AT3G47680)DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922] identity=29.7; qcov=0.412; evalue=2.48e-08; confidence=low |
| Rice | Os12g0228500- identity=23.2; qcov=0.755; evalue=1.16e-06; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994354 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057775385.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057775385.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057775385.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057775385.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057775385.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:51115969 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A16,B3,C10 |
Chr7:51115977 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A16,B3,C10 |
Chr7:51115979 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B129,C8 |
Chr7:51115994 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr7:51115995 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A20,C37 |
Chr7:51116010 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr7:51116012 |
G |
GA |
1bp_insertion | frameshift_variant | 2 | A16,C10 |
Chr7:51116012 |
G |
GA |
1bp_insertion | CDS_variant | 2 | A16,C10 |
Chr7:51116013 |
GT |
G |
1bp_deletion | frameshift_variant | 3 | B123,B36,C54 |
Chr7:51116013 |
GT |
G |
1bp_deletion | CDS_variant | 3 | B123,B36,C54 |
Chr7:51116022 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr7:51116061 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B18,B56,C15,D6 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。