当前解析结果
SmilChr07G004009| 统一新 Gene ID | SmilChr07G004009 |
|---|---|
| 名称 | SmilChr07G004009 |
| 描述 | pentatricopeptide repeat-containing protein At5g46580, chloroplastic |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 51128724 - 51131222 / + |
| NCBI Gene ID | LOC130994695 |
|---|---|
| GeneID | 130994695 |
| locus_tag | - |
| NCBI Name | LOC130994695 |
| 原始查询 | SmilChr07G004009 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At5g46580, chloroplastic |
| 产物 | pentatricopeptide repeat-containing protein At5g46580%2C chloroplastic |
| Arabidopsis | AT5G46580 (AT5G46580)pentatricopeptide (PPR) repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:834701] identity=70.4; qcov=0.926; evalue=0; confidence=high |
| Rice | Os03g0856100- identity=57.4; qcov=0.793; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994695 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057775746.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.40000 | XP_057775746.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057775746.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057775746.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057775746.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:51128891 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A21,B101,C65 |
Chr7:51129100 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B16,B45,D9 |
Chr7:51129447 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C1,C41,C64,C66 |
Chr7:51129477 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C1,C41,C64,C66 |
Chr7:51129561 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,A8,B3,B81 |
Chr7:51129643 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,B26 |
Chr7:51129852 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A16,B130,B15,B27,B73 |
Chr7:51129915 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr7:51129999 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | C15 |
Chr7:51129999 |
GT |
G |
1bp_deletion | CDS_variant | 1 | C15 |
Chr7:51130001 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C15 |
Chr7:51130001 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775746.1PF13812
PPR_3 203-259 aa
PF01535
PPR 214-241 aa
PF13041
PPR_2 218-260 aa
PF01535
PPR 249-274 aa
PF17177
PPR_long 265-363 aa
PF13812
PPR_3 276-330 aa
PF23276
TPR_24 294-413 aa
PF13812
PPR_3 305-365 aa
PF12854
PPR_1 313-345 aa
PF13041
PPR_2 316-362 aa
PF01535
PPR 319-349 aa
PF13812
PPR_3 339-383 aa
PF01535
PPR 355-383 aa
PF17177
PPR_long 369-523 aa
PF13812
PPR_3 378-435 aa
PF13041
PPR_2 389-432 aa
PF01535
PPR 390-416 aa
PF12854
PPR_1 420-451 aa
PF01535
PPR 426-455 aa
PF13812
PPR_3 446-492 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775746.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 203 | 259 | 7e-39 | 132.4 | Pentatricopeptide repeat domain |
XP_057775746.1 |
Pfam | PF01535 |
PPR | Repeat | 214 | 241 | 1.8e-47 | 157.0 | PPR repeat |
XP_057775746.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 218 | 260 | 8e-56 | 186.7 | PPR repeat family |
XP_057775746.1 |
Pfam | PF01535 |
PPR | Repeat | 249 | 274 | 1.8e-47 | 157.0 | PPR repeat |
XP_057775746.1 |
Pfam | PF17177 |
PPR_long | Repeat | 265 | 363 | 2e-25 | 90.2 | Pentacotripeptide-repeat region of PRORP |
XP_057775746.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 276 | 330 | 7e-39 | 132.4 | Pentatricopeptide repeat domain |
XP_057775746.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 294 | 413 | 1.4e-12 | 48.4 | Pentatricopeptide repeat-containing protein |
XP_057775746.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 305 | 365 | 7e-39 | 132.4 | Pentatricopeptide repeat domain |
XP_057775746.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 313 | 345 | 6.3e-40 | 135.3 | PPR repeat |
XP_057775746.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 316 | 362 | 8e-56 | 186.7 | PPR repeat family |
XP_057775746.1 |
Pfam | PF01535 |
PPR | Repeat | 319 | 349 | 1.8e-47 | 157.0 | PPR repeat |
XP_057775746.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 339 | 383 | 7e-39 | 132.4 | Pentatricopeptide repeat domain |
XP_057775746.1 |
Pfam | PF01535 |
PPR | Repeat | 355 | 383 | 1.8e-47 | 157.0 | PPR repeat |
XP_057775746.1 |
Pfam | PF17177 |
PPR_long | Repeat | 369 | 523 | 2e-25 | 90.2 | Pentacotripeptide-repeat region of PRORP |
XP_057775746.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 378 | 435 | 7e-39 | 132.4 | Pentatricopeptide repeat domain |
XP_057775746.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 389 | 432 | 8e-56 | 186.7 | PPR repeat family |
XP_057775746.1 |
Pfam | PF01535 |
PPR | Repeat | 390 | 416 | 1.8e-47 | 157.0 | PPR repeat |
XP_057775746.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 420 | 451 | 6.3e-40 | 135.3 | PPR repeat |
XP_057775746.1 |
Pfam | PF01535 |
PPR | Repeat | 426 | 455 | 1.8e-47 | 157.0 | PPR repeat |
XP_057775746.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 446 | 492 | 7e-39 | 132.4 | Pentatricopeptide repeat domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。