当前解析结果
SmilChr07G004015| 统一新 Gene ID | SmilChr07G004015 |
|---|---|
| 名称 | SmilChr07G004015 |
| 描述 | uncharacterized SmilChr07G004015 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 51224886 - 51226869 / + |
| NCBI Gene ID | LOC130994699 |
|---|---|
| GeneID | 130994699 |
| locus_tag | - |
| NCBI Name | LOC130994699 |
| 原始查询 | SmilChr07G004015 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Nucleotide-diphospho-sugar transferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818546]; symbol=AT2G39630; hit=AT2G39630; species=arabidopsis; confidence=weak |
| 产物 | Nucleotide-diphospho-sugar transferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818546]; symbol=AT2G39630; hit=AT2G39630; species=arabidopsis; confidence=weak |
| Arabidopsis | AT2G39630 (AT2G39630)Nucleotide-diphospho-sugar transferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818546] identity=71.4; qcov=0.28; evalue=1.68e-11; confidence=weak |
| Rice | Os03g0821800- identity=77.8; qcov=0.288; evalue=3.05e-11; confidence=weak |
| GO | GO:0005789 (endoplasmic reticulum membrane) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994699 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057775752.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057775752.1 |
| 3 | Chloroplast | 叶绿体 | 0.20000 | XP_057775753.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775752.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775752.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:51225531 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr7:51225539 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B110,B127,B61,C12 |
Chr7:51225615 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B76,C45,C80 |
Chr7:51225666 |
TC |
T |
1bp_deletion | frameshift_variant | 81 | A11,A13,A14,A2,A23,A24,A3,A4,A5,A8,B1,B10,B101,B106,B108,B109,B113,B115,B12,B121,B127,B128,B132,B135,B138,B15,B17,B27,B28,B29,B31,B37,B4,B41,B47,B51,B55,B56,B64,B69,B71,B74,B75,B76,B8,B81,B84,B86,B93,B98,B99,C14,C2,C20,C25,C26,C29,C30,C32,C33,C36,C38,C39,C45,C47,C48,C51,C59,C60,C62,C67,C68,C71,C75,C78,C80,C85,C9,D5,D6,D9 |
Chr7:51225693 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B10,B11,B99,C25 |
Chr7:51225717 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B120,B41,B53,C57 |
Chr7:51225734 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A21,B103,C28 |
Chr7:51225735 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:51225973 |
AC |
A |
1bp_deletion | frameshift_variant | 5 | A7,B17,B24,B53,C79 |
Chr7:51225973 |
AC |
A |
1bp_deletion | CDS_variant | 5 | A7,B17,B24,B53,C79 |
Chr7:51226003 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B100,D10 |
Chr7:51226003 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B100,D10 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。