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TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G004046

染色体: Chr07 坐标: 51779326-51784017 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G004046
名称SmilChr07G004046
描述pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向51779326 - 51784017 / +

ID 对照

NCBI Gene IDLOC130994728
GeneID130994728
locus_tag-
NCBI NameLOC130994728
原始查询SmilChr07G004046

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g56690%2C mitochondrial-like
ArabidopsisAT1G56690 (AT1G56690)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842125]
identity=63.4; qcov=0.932; evalue=0; confidence=high
RiceOs03g0317100
-
identity=56.9; qcov=0.913; evalue=0; confidence=high
GOGO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF20431 (E_motif)
InterPro-
eggNOG-
NRGeneID:130994728

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057775776.1
2 Nucleus 细胞核 0.00000 XP_057775776.1
3 Chromosome 染色体 0.00000 XP_057775776.1
4 Centromere 着丝粒 0.00000 XP_057775776.1
5 Chromatin 染色质 0.00000 XP_057775776.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:51780820 G A EMS_canonical_SNV CDS_variant 2 B26,C2
Chr7:51780872 G A EMS_canonical_SNV CDS_variant 1 B127
Chr7:51780909 G A EMS_canonical_SNV CDS_variant 1 C68
Chr7:51781470 C T EMS_canonical_SNV CDS_variant 1 C81
Chr7:51781475 C T EMS_canonical_SNV CDS_variant 4 A24,B63,C4,C60
Chr7:51781502 G A EMS_canonical_SNV CDS_variant 1 B32
Chr7:51781595 C T EMS_canonical_SNV CDS_variant 3 B52,C32,C68
Chr7:51781699 G A EMS_canonical_SNV CDS_variant 3 B32,B43,C37
Chr7:51781812 G A EMS_canonical_SNV CDS_variant 1 B45
Chr7:51781837 C T EMS_canonical_SNV CDS_variant 2 B85,D6
Chr7:51781955 G A EMS_canonical_SNV CDS_variant 4 B85,C2,C39,D6
Chr7:51781991 C T EMS_canonical_SNV CDS_variant 2 B85,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775776.1
751 aa
N
1
376
751
PPR
PPR
PPR
PPR
PPR
PPR_1
PPR
PPR
PPR
PPR
PPR_2
PPR_1
PPR
PPR_3
PPR
PPR
E_motif
PPR
DYW_deaminase
C
PF01535 PPR 95-123 aa PF01535 PPR 125-153 aa PF01535 PPR 158-188 aa PF01535 PPR 189-217 aa PF01535 PPR 223-250 aa PF12854 PPR_1 248-276 aa PF01535 PPR 251-280 aa PF01535 PPR 282-310 aa PF01535 PPR 313-341 aa PF01535 PPR 345-373 aa PF13041 PPR_2 442-489 aa PF12854 PPR_1 443-470 aa PF01535 PPR 445-475 aa PF13812 PPR_3 466-526 aa PF01535 PPR 481-506 aa PF01535 PPR 518-542 aa PF20431 E_motif 560-622 aa PF01535 PPR 589-611 aa PF14432 DYW_deaminase 659-751 aa
XP_057775777.1
751 aa
N
1
376
751
PPR
PPR
PPR
PPR
PPR
PPR_1
PPR
PPR
PPR
PPR
PPR_2
PPR_1
PPR
PPR_3
PPR
PPR
E_motif
PPR
DYW_deaminase
C
PF01535 PPR 95-123 aa PF01535 PPR 125-153 aa PF01535 PPR 158-188 aa PF01535 PPR 189-217 aa PF01535 PPR 223-250 aa PF12854 PPR_1 248-276 aa PF01535 PPR 251-280 aa PF01535 PPR 282-310 aa PF01535 PPR 313-341 aa PF01535 PPR 345-373 aa PF13041 PPR_2 442-489 aa PF12854 PPR_1 443-470 aa PF01535 PPR 445-475 aa PF13812 PPR_3 466-526 aa PF01535 PPR 481-506 aa PF01535 PPR 518-542 aa PF20431 E_motif 560-622 aa PF01535 PPR 589-611 aa PF14432 DYW_deaminase 659-751 aa
XP_057775778.1
751 aa
N
1
376
751
PPR
PPR
PPR
PPR
PPR
PPR_1
PPR
PPR
PPR
PPR
PPR_2
PPR_1
PPR
PPR_3
PPR
PPR
E_motif
PPR
DYW_deaminase
C
PF01535 PPR 95-123 aa PF01535 PPR 125-153 aa PF01535 PPR 158-188 aa PF01535 PPR 189-217 aa PF01535 PPR 223-250 aa PF12854 PPR_1 248-276 aa PF01535 PPR 251-280 aa PF01535 PPR 282-310 aa PF01535 PPR 313-341 aa PF01535 PPR 345-373 aa PF13041 PPR_2 442-489 aa PF12854 PPR_1 443-470 aa PF01535 PPR 445-475 aa PF13812 PPR_3 466-526 aa PF01535 PPR 481-506 aa PF01535 PPR 518-542 aa PF20431 E_motif 560-622 aa PF01535 PPR 589-611 aa PF14432 DYW_deaminase 659-751 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057775776.1 Pfam PF01535 PPR Repeat 95 123 3.7e-96 309.6 PPR repeat
XP_057775776.1 Pfam PF01535 PPR Repeat 125 153 3.7e-96 309.6 PPR repeat
XP_057775776.1 Pfam PF01535 PPR Repeat 158 188 3.7e-96 309.6 PPR repeat
XP_057775776.1 Pfam PF01535 PPR Repeat 189 217 3.7e-96 309.6 PPR repeat
XP_057775776.1 Pfam PF01535 PPR Repeat 223 250 3.7e-96 309.6 PPR repeat
XP_057775776.1 Pfam PF12854 PPR_1 Repeat 248 276 5.2e-57 190.0 PPR repeat
XP_057775776.1 Pfam PF01535 PPR Repeat 251 280 3.7e-96 309.6 PPR repeat
XP_057775776.1 Pfam PF01535 PPR Repeat 282 310 3.7e-96 309.6 PPR repeat
XP_057775776.1 Pfam PF01535 PPR Repeat 313 341 3.7e-96 309.6 PPR repeat
XP_057775776.1 Pfam PF01535 PPR Repeat 345 373 3.7e-96 309.6 PPR repeat
XP_057775776.1 Pfam PF13041 PPR_2 Repeat 442 489 6.7e-84 276.6 PPR repeat family
XP_057775776.1 Pfam PF12854 PPR_1 Repeat 443 470 5.2e-57 190.0 PPR repeat
XP_057775776.1 Pfam PF01535 PPR Repeat 445 475 3.7e-96 309.6 PPR repeat
XP_057775776.1 Pfam PF13812 PPR_3 Repeat 466 526 3e-25 88.8 Pentatricopeptide repeat domain
XP_057775776.1 Pfam PF01535 PPR Repeat 481 506 3.7e-96 309.6 PPR repeat
XP_057775776.1 Pfam PF01535 PPR Repeat 518 542 3.7e-96 309.6 PPR repeat
XP_057775776.1 Pfam PF20431 E_motif Repeat 560 622 9.1e-24 84.2 E motif
XP_057775776.1 Pfam PF01535 PPR Repeat 589 611 3.7e-96 309.6 PPR repeat
XP_057775776.1 Pfam PF14432 DYW_deaminase Domain 659 751 5.1e-43 145.5 DYW family of nucleic acid deaminases
XP_057775777.1 Pfam PF01535 PPR Repeat 95 123 3.7e-96 309.6 PPR repeat
XP_057775777.1 Pfam PF01535 PPR Repeat 125 153 3.7e-96 309.6 PPR repeat
XP_057775777.1 Pfam PF01535 PPR Repeat 158 188 3.7e-96 309.6 PPR repeat
XP_057775777.1 Pfam PF01535 PPR Repeat 189 217 3.7e-96 309.6 PPR repeat
XP_057775777.1 Pfam PF01535 PPR Repeat 223 250 3.7e-96 309.6 PPR repeat
XP_057775777.1 Pfam PF12854 PPR_1 Repeat 248 276 5.2e-57 190.0 PPR repeat
XP_057775777.1 Pfam PF01535 PPR Repeat 251 280 3.7e-96 309.6 PPR repeat
XP_057775777.1 Pfam PF01535 PPR Repeat 282 310 3.7e-96 309.6 PPR repeat
XP_057775777.1 Pfam PF01535 PPR Repeat 313 341 3.7e-96 309.6 PPR repeat
XP_057775777.1 Pfam PF01535 PPR Repeat 345 373 3.7e-96 309.6 PPR repeat
XP_057775777.1 Pfam PF13041 PPR_2 Repeat 442 489 6.7e-84 276.6 PPR repeat family
XP_057775777.1 Pfam PF12854 PPR_1 Repeat 443 470 5.2e-57 190.0 PPR repeat
XP_057775777.1 Pfam PF01535 PPR Repeat 445 475 3.7e-96 309.6 PPR repeat
XP_057775777.1 Pfam PF13812 PPR_3 Repeat 466 526 3e-25 88.8 Pentatricopeptide repeat domain
XP_057775777.1 Pfam PF01535 PPR Repeat 481 506 3.7e-96 309.6 PPR repeat
XP_057775777.1 Pfam PF01535 PPR Repeat 518 542 3.7e-96 309.6 PPR repeat
XP_057775777.1 Pfam PF20431 E_motif Repeat 560 622 9.1e-24 84.2 E motif
XP_057775777.1 Pfam PF01535 PPR Repeat 589 611 3.7e-96 309.6 PPR repeat
XP_057775777.1 Pfam PF14432 DYW_deaminase Domain 659 751 5.1e-43 145.5 DYW family of nucleic acid deaminases
XP_057775778.1 Pfam PF01535 PPR Repeat 95 123 3.7e-96 309.6 PPR repeat
XP_057775778.1 Pfam PF01535 PPR Repeat 125 153 3.7e-96 309.6 PPR repeat
XP_057775778.1 Pfam PF01535 PPR Repeat 158 188 3.7e-96 309.6 PPR repeat
XP_057775778.1 Pfam PF01535 PPR Repeat 189 217 3.7e-96 309.6 PPR repeat
XP_057775778.1 Pfam PF01535 PPR Repeat 223 250 3.7e-96 309.6 PPR repeat
XP_057775778.1 Pfam PF12854 PPR_1 Repeat 248 276 5.2e-57 190.0 PPR repeat
XP_057775778.1 Pfam PF01535 PPR Repeat 251 280 3.7e-96 309.6 PPR repeat
XP_057775778.1 Pfam PF01535 PPR Repeat 282 310 3.7e-96 309.6 PPR repeat
XP_057775778.1 Pfam PF01535 PPR Repeat 313 341 3.7e-96 309.6 PPR repeat
XP_057775778.1 Pfam PF01535 PPR Repeat 345 373 3.7e-96 309.6 PPR repeat
XP_057775778.1 Pfam PF13041 PPR_2 Repeat 442 489 6.7e-84 276.6 PPR repeat family
XP_057775778.1 Pfam PF12854 PPR_1 Repeat 443 470 5.2e-57 190.0 PPR repeat
XP_057775778.1 Pfam PF01535 PPR Repeat 445 475 3.7e-96 309.6 PPR repeat
XP_057775778.1 Pfam PF13812 PPR_3 Repeat 466 526 3e-25 88.8 Pentatricopeptide repeat domain
XP_057775778.1 Pfam PF01535 PPR Repeat 481 506 3.7e-96 309.6 PPR repeat
XP_057775778.1 Pfam PF01535 PPR Repeat 518 542 3.7e-96 309.6 PPR repeat
XP_057775778.1 Pfam PF20431 E_motif Repeat 560 622 9.1e-24 84.2 E motif
XP_057775778.1 Pfam PF01535 PPR Repeat 589 611 3.7e-96 309.6 PPR repeat
XP_057775778.1 Pfam PF14432 DYW_deaminase Domain 659 751 5.1e-43 145.5 DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057919793.1
GGATGGCAGCAGCAAGCAAGAGTGAAGAGCCAAACTCGAATTAAACAAAATTAGGCGCCACTGCGCCACCATCAACATTCACCCAAACTCCATTTTTCTCTCAAACCCTACCTCCGTAACATCCACATTTATTCAAACCATACAATACAGGAATGAAGAGAGAATCAATTTGATTATACCTGTGCTTAGGAGTTGCAATGAAAAAATCGAAGATATGATGCTCTCGCCTCTCTGGTTTCTTCTTCAACTTTAAGTGATGC...
XM_057919795.1
GGATGGCAGCAGCAAGCAAGAGTGAAGAGCCAAACTCGAATTAAACAAAATTAGGCGCCACTGCGCCACCATCAACATTCACCCAAACTCCATTTTTCTCTCAAACCCTACCTCCGTAACATCCACATTTATTCAAACCATACAATACAGGAATGAAGAGAGAATCAATTTGATTATACCTGTGCTTAGGAGTTGCAATGAAAAAATCGAAGATATGATGCTCTCGCCTCTCTGGTTTCTTCTTCAACTTTAAGTGATGC...

CDS

3 records

下载 CDS FASTA
LOC130994728
ATGGCGGCGCTTCAGCCGTTGATTCGCATTGCCGCTGCTTCGTCGAAACTGGACTCAATTCCATTTCTTTTCTTTAACCTCCGATCCTTTTGTTGCTCCTCCGCCGGTGCAGTGGAAGCCATTGGCGCGGTACATATCCAAAAGTGCTTCAGAATTCAGTATCGAGGATATTGTACTTGCACCGACATGTCAACTGCTTCTCAAATCACTTATTATGTCCGCCTGGGTGATATTGAAATGGCACGAAAATTGTTTGATCG...
LOC130994728
ATGGCGGCGCTTCAGCCGTTGATTCGCATTGCCGCTGCTTCGTCGAAACTGGACTCAATTCCATTTCTTTTCTTTAACCTCCGATCCTTTTGTTGCTCCTCCGCCGGTGCAGTGGAAGCCATTGGCGCGGTACATATCCAAAAGTGCTTCAGAATTCAGTATCGAGGATATTGTACTTGCACCGACATGTCAACTGCTTCTCAAATCACTTATTATGTCCGCCTGGGTGATATTGAAATGGCACGAAAATTGTTTGATCG...

Protein

3 records

下载 Protein FASTA
XP_057775776.1
MAALQPLIRIAAASSKLDSIPFLFFNLRSFCCSSAGAVEAIGAVHIQKCFRIQYRGYCTCTDMSTASQITYYVRLGDIEMARKLFDRTPQKTIASWNSIISGYFQYCQPNEAQCLFDEMPERNTVSWNGLISGYIKNRMVKKAREVFDLMPEREKNVISWTAMVRGYVEEGMVREAEALFWQMPEKNVISWTVMLNGLIREDRIDEARRLYDLMPVKDVVARTTMLGGLCSKGQLDEAREIFDCMKQRNVVSWTTMISGY...
XP_057775777.1
MAALQPLIRIAAASSKLDSIPFLFFNLRSFCCSSAGAVEAIGAVHIQKCFRIQYRGYCTCTDMSTASQITYYVRLGDIEMARKLFDRTPQKTIASWNSIISGYFQYCQPNEAQCLFDEMPERNTVSWNGLISGYIKNRMVKKAREVFDLMPEREKNVISWTAMVRGYVEEGMVREAEALFWQMPEKNVISWTVMLNGLIREDRIDEARRLYDLMPVKDVVARTTMLGGLCSKGQLDEAREIFDCMKQRNVVSWTTMISGY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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