当前解析结果
SmilChr07G004047| 统一新 Gene ID | SmilChr07G004047 |
|---|---|
| 名称 | SmilChr07G004047 |
| 描述 | putative late blight resistance protein homolog R1A-3 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 51785404 - 51788163 / - |
| NCBI Gene ID | LOC130994367 |
|---|---|
| GeneID | 130994367 |
| locus_tag | - |
| NCBI Name | LOC130994367 |
| 原始查询 | SmilChr07G004047 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-3 |
| 产物 | putative late blight resistance protein homolog R1A-3 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=34.6; qcov=0.386; evalue=1.15e-54; confidence=low |
| Rice | Os11g0633500- identity=36.5; qcov=0.399; evalue=1.71e-67; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994367 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057775395.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057775395.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057775395.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775395.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775395.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:51785412 |
A |
AAG |
2bp_insertion | frameshift_variant | 1 | B102 |
Chr7:51785412 |
A |
AAG |
2bp_insertion | CDS_variant | 1 | B102 |
Chr7:51785446 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B45,B90,D10 |
Chr7:51785488 |
G |
GA |
1bp_insertion | frameshift_variant | 2 | A6,C54 |
Chr7:51785488 |
G |
GA |
1bp_insertion | CDS_variant | 2 | A6,C54 |
Chr7:51785492 |
AC |
A |
1bp_deletion | frameshift_variant | 15 | A25,B102,B120,B131,B32,B37,B38,B63,C49,C56,C59,C65,C71,C74,C87 |
Chr7:51785514 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A6,B92,C54 |
Chr7:51785521 |
GC |
G |
1bp_deletion | frameshift_variant | 7 | A10,B50,B98,C10,C48,C55,C6 |
Chr7:51785528 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A6,B92,C54 |
Chr7:51785569 |
GGC |
G |
2bp_deletion | frameshift_variant | 6 | B112,B20,B28,B78,C23,C53 |
Chr7:51785573 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,B102,B98,C10,C50 |
Chr7:51785574 |
A |
AGC |
2bp_insertion | frameshift_variant | 6 | B112,B20,B28,B78,C23,C53 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775395.1PF00931
NB-ARC 209-370 aa
PF23559
WHD_DRP 466-526 aa
PF23598
LRR_14 596-872 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775395.1 |
Pfam | PF00931 |
NB-ARC | Domain | 209 | 370 | 9.1e-44 | 149.8 | NB-ARC domain |
XP_057775395.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 466 | 526 | 4.1e-18 | 65.9 | Disease resistance protein Winged helix domain |
XP_057775395.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 596 | 872 | 5.3e-14 | 52.5 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。