Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004071`

染色体: Chr07 坐标: 52068603-52083067 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004071`
名称	SmilChr07G004071
描述	uncharacterized SmilChr07G004071
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	52068603 - 52083067 / `+`

ID 对照

NCBI Gene ID	`LOC130994745`
GeneID	`130994745`
locus_tag	`-`
NCBI Name	`LOC130994745`
原始查询	`SmilChr07G004071`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os08g0206700; species=rice; confidence=weak
产物	hit=Os08g0206700; species=rice; confidence=weak
Arabidopsis	`AT5G52230` (MBD13) methyl-CPG-binding domain protein 13 [Source:NCBI gene (formerly Entrezgene);Acc:835299] identity=41.9; qcov=0.131; evalue=2.65e-12; confidence=weak
Rice	`Os08g0206700` - identity=45.5; qcov=0.118; evalue=3.63e-15; confidence=weak
GO	GO:0003677 (DNA binding)
KEGG	-
Pfam	PF01429 (MBD)
InterPro	-
eggNOG	-
NR	GeneID:130994745

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057775788.1`
2	Chromosome	染色体	0.00000	`XP_057775788.1`
3	Centromere	着丝粒	0.00000	`XP_057775788.1`
4	Chromatin	染色质	0.00000	`XP_057775788.1`
5	Telomere	端粒	0.00000	`XP_057775788.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:52071520`	`A`	`AC`	1bp_insertion	frameshift_variant	98	A1,A15,A16,A19,A2,A22,A3,A4,A5,A6,A8,B101,B106,B110,B111,B113,B118,B12,B122,B125,B127,B128,B129,B136,B2,B20,B24,B28,B29,B38,B39,B4,B41,B42,B43,B44,B45,B46,B47,B48,B53,B54,B6,B60,B61,B63,B65,B68,B69,B7,B71,B72,B75,B76,B8,B88,B9,B90,B92,B93,B94,B95,C1,C10,C11,C14,C20,C21,C28,C29,C30,C32,C35,C4,C46,C49,C52,C54,C56,C57,C60,C62,C63,C64,C66,C67,C68,C69,C71,C77,C78,C79,C9,D11,D3,D5,D7,D9
`Chr7:52073689`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B55
`Chr7:52073689`	`CT`	`C`	1bp_deletion	CDS_variant	1	B55
`Chr7:52073692`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr7:52074178`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A20,C54,D10
`Chr7:52074687`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:52074717`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr7:52075204`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr7:52081481`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:52081702`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B106
`Chr7:52081785`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:52081814`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A9,B119,C48,C81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775788.1

657 aa

328

657

MBD

PF01429 MBD 43-96 aa PF01429 MBD 223-269 aa

XP_057775790.1

657 aa

328

657

MBD

PF01429 MBD 43-96 aa PF01429 MBD 223-269 aa

XP_057775791.1

654 aa

327

654

MBD

PF01429 MBD 43-96 aa PF01429 MBD 220-266 aa

XP_057775792.1

653 aa

326

653

MBD

PF01429 MBD 43-96 aa PF01429 MBD 220-266 aa

XP_057775793.1

656 aa

328

656

MBD

PF01429 MBD 43-96 aa PF01429 MBD 223-269 aa

XP_057775794.1

654 aa

327

654

MBD

PF01429 MBD 43-96 aa PF01429 MBD 220-266 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775788.1`	Pfam	`PF01429`	MBD	Domain	43	96	1.6e-15	57.2	Methyl-CpG binding domain
`XP_057775788.1`	Pfam	`PF01429`	MBD	Domain	223	269	1.6e-15	57.2	Methyl-CpG binding domain
`XP_057775790.1`	Pfam	`PF01429`	MBD	Domain	43	96	1.6e-15	57.2	Methyl-CpG binding domain
`XP_057775790.1`	Pfam	`PF01429`	MBD	Domain	223	269	1.6e-15	57.2	Methyl-CpG binding domain
`XP_057775791.1`	Pfam	`PF01429`	MBD	Domain	43	96	1.6e-15	57.2	Methyl-CpG binding domain
`XP_057775791.1`	Pfam	`PF01429`	MBD	Domain	220	266	1.6e-15	57.2	Methyl-CpG binding domain
`XP_057775792.1`	Pfam	`PF01429`	MBD	Domain	43	96	1.6e-15	57.2	Methyl-CpG binding domain
`XP_057775792.1`	Pfam	`PF01429`	MBD	Domain	220	266	1.6e-15	57.2	Methyl-CpG binding domain
`XP_057775793.1`	Pfam	`PF01429`	MBD	Domain	43	96	1.6e-15	57.2	Methyl-CpG binding domain
`XP_057775793.1`	Pfam	`PF01429`	MBD	Domain	223	269	1.6e-15	57.2	Methyl-CpG binding domain
`XP_057775794.1`	Pfam	`PF01429`	MBD	Domain	43	96	1.6e-15	57.2	Methyl-CpG binding domain
`XP_057775794.1`	Pfam	`PF01429`	MBD	Domain	220	266	1.6e-15	57.2	Methyl-CpG binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057919805.1
TTTTTTTGTTTTTGGGTTCTTGAGGTTTTGCCTATTGCATTTAAGAATAGAGTCAATTAACCCACCGATAAAAAAGAAGTGTGTTGAGATTTTTTTTCCCGATGAGCTCAACTCAAGTGTAGCAGTAGAAGTTTATGTAAACACGTGTATAAAAAGCCGAACATTTCTTTTCGTCCAATTTCGGCAGACCCACCTTCCTCCATTTCAACCCATATAAATATTCAATTTCCTCTATTTTCTCACACAAATAAAATCTTCGC...

XM_057919808.1
AGAAGTGTGTTGAGATTTTTTTTCCCGATGAGCTCAACTCAAGTGTAGCAGTAGAAGTTTATGTAAACACGTGTATAAAAAGCCGAACATTTCTTTTCGTCCAATTTCGGCAGACCCACCTTCCTCCATTTCAACCCATATAAATATTCAATTTCCTCTATTTTCTCACACAAATAAAATCTTCGCCCAACTCCTCTCAAAGAATTTCAATAAACGGTGTGAATCTCGGAATTCCGGCGGAAATGGTTGCCGAGGTGTCG...

CDS

6 records

下载 CDS FASTA

LOC130994745
ATGCTGATGATGATAATGGGCCCTCCTCGTCTAACAAAGTTGACAACAGTCTTCTTGTTACACCTCAAACAAAAAATGCTGCTGACTGATAATGGGCCCTCCTCATTTAACAAAGTTGATGCGATATCAGAAAAAACAAATGATTCGGCATGGTTGCCTAATGGATGGACAGTGGAAGAAAGAACAAGAAAGAGCGGCTCAGCATATGGATCATCATACAAGGTGTATACTGAATCATCAACCGAGAAGAAACTTTATTC...

Protein

6 records

下载 Protein FASTA

XP_057775788.1
MLMMIMGPPRLTKLTTVFLLHLKQKMLLTDNGPSSFNKVDAISEKTNDSAWLPNGWTVEERTRKSGSAYGSSYKVYTESSTEKKLYSKASVIRYLNDVAHIDIMTQQNKSDNVDEPLPDKSLQISPMTNTGSISGKKRKANSLAKVSAVPEKSPQITSTTSTHGTHEQGMEGNSVVKIDNVGEPFSDTSPQVRSTTNNGGIRKTKRKISSFVTVAIERTAADDLPDGWIKEIRTSKSGDKIRKDPYYTDPASGFMFRSKP...

XP_057775790.1
MLMMIMGPPRLTKLTTVFLLHLKQKMLLTDNGPSSFNKVDAISEKTNDSAWLPNGWTVEERTRKSGSAYGSSYKVYTESSTEKKLYSKASVIRYLNDVAHIDIMTQQNKSDNVDEPLPDKSLQISPMTNTGSISGKKRKANSLAKVSAVPEKSPQITSTTSTHGTHEQGMEGNSVVKIDNVGEPFSDTSPQVRSTTNNGGIRKTKRKISSFVTVAIERTAADDLPDGWIKEIRTSKSGDKIRKDPYYTDPASGFMFRSKP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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