Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G004091

染色体: Chr07 坐标: 52456715-52458400 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G004091
名称SmilChr07G004091
描述putative late blight resistance protein homolog R1B-17
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向52456715 - 52458400 / +

ID 对照

NCBI Gene IDLOC130994378
GeneID130994378
locus_tag-
NCBI NameLOC130994378
原始查询SmilChr07G004091

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative late blight resistance protein homolog R1B-17
产物putative late blight resistance protein homolog R1B-17
ArabidopsisAT1G58400 (AT1G58400)
Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842209]
identity=26.3; qcov=0.977; evalue=1.07e-24; confidence=low
RiceOs08g0424700 (P0456B03.103)
-
identity=28.4; qcov=0.966; evalue=4.03e-30; confidence=low
GOGO:0006457 (protein folding); GO:0043014 (alpha-tubulin binding); GO:0043531 (ADP binding)
KEGG-
PfamPF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro-
eggNOG-
NRGeneID:130994378

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 0.80000 XP_057775406.1
2 Cytosol 细胞质基质 0.60000 XP_057775406.1
3 Nucleus 细胞核 0.20000 XP_057775406.1
4 Chromosome 染色体 0.00000 XP_057775406.1
5 Centromere 着丝粒 0.00000 XP_057775406.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:52456717 G A EMS_canonical_SNV CDS_variant 2 A14,D3
Chr7:52456720 G A EMS_canonical_SNV CDS_variant 1 B95
Chr7:52456722 C T EMS_canonical_SNV CDS_variant 1 D3
Chr7:52456733 G A EMS_canonical_SNV CDS_variant 1 B33
Chr7:52456769 G A EMS_canonical_SNV CDS_variant 1 C58
Chr7:52456793 C T EMS_canonical_SNV CDS_variant 1 D3
Chr7:52456843 G A EMS_canonical_SNV CDS_variant 2 B30,B36
Chr7:52456863 G A EMS_canonical_SNV CDS_variant 3 B112,B30,B36
Chr7:52456865 G A EMS_canonical_SNV CDS_variant 5 B2,B52,B71,B80,C55
Chr7:52456891 C T EMS_canonical_SNV CDS_variant 4 B112,B30,B36,D6
Chr7:52456976 C T EMS_canonical_SNV CDS_variant 3 B30,B85,C25
Chr7:52456993 G A EMS_canonical_SNV CDS_variant 3 B30,B85,C25

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057775406.1
561 aa
N
1
280
561
WHD_DRP
LRR_14
C
PF23559 WHD_DRP 104-164 aa PF23598 LRR_14 220-505 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057775406.1 Pfam PF23559 WHD_DRP Domain 104 164 3.5e-18 66.1 Disease resistance protein Winged helix domain
XP_057775406.1 Pfam PF23598 LRR_14 Repeat 220 505 3.4e-18 66.3 Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057919423.1
ATGAAGGCATTCGAAAATGAAGATTGCCCTAGTGAAGTAGAGGAAGTTGGAAGGGAGATTGTTAAATTATGCAAAGGACTAGCATTGTCCATTGTTGTGATTGGTGGGAGTCTTCTAAACTCTCCCAGGAATGTAGGATATTGGAAGAGTGTTGCCAAAGATATAGAATCAAGTCCCAATTCAAAAGAGAAAGAAGAAAGCTTAGATGTATTGTTTTCGAGTTATAACCACTTGCCTCCTCATCTAAAGCCTTGCTTTCT...

CDS

1 records

下载 CDS FASTA
LOC130994378
ATGAAGGCATTCGAAAATGAAGATTGCCCTAGTGAAGTAGAGGAAGTTGGAAGGGAGATTGTTAAATTATGCAAAGGACTAGCATTGTCCATTGTTGTGATTGGTGGGAGTCTTCTAAACTCTCCCAGGAATGTAGGATATTGGAAGAGTGTTGCCAAAGATATAGAATCAAGTCCCAATTCAAAAGAGAAAGAAGAAAGCTTAGATGTATTGTTTTCGAGTTATAACCACTTGCCTCCTCATCTAAAGCCTTGCTTTCT...

Protein

1 records

下载 Protein FASTA
XP_057775406.1
MKAFENEDCPSEVEEVGREIVKLCKGLALSIVVIGGSLLNSPRNVGYWKSVAKDIESSPNSKEKEESLDVLFSSYNHLPPHLKPCFLHIGVLKHINYANLNILSIIQLWVAEGFLKSNGGRVLEEIAEDYLKELVDRNLILVVRRSKNGKMKRCDIHDLMRDLCLNVGEQQGFFHVTQGPVLGTERRLLYNKATWRRETSRPVLARSIMKCKFQKEFSYKHRLLRIWHLHRHMPVEESLNGCVNLRHLALWDSVYKGVLK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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