当前解析结果
SmilChr07G004099| 统一新 Gene ID | SmilChr07G004099 |
|---|---|
| 名称 | SmilChr07G004099 |
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 52564208 - 52566731 / + |
| NCBI Gene ID | LOC130994383 |
|---|---|
| GeneID | 130994383 |
| locus_tag | - |
| NCBI Name | LOC130994383 |
| 原始查询 | SmilChr07G004099 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 产物 | putative late blight resistance protein homolog R1B-16 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=30.8; qcov=0.772; evalue=7.87e-62; confidence=low |
| Rice | Os07g0186500- identity=30.4; qcov=0.863; evalue=5.12e-68; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13173 (AAA_14); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994383 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057775411.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057775411.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057775411.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057775411.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057775411.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:52564307 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr7:52564308 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A25,B24,B38,D10 |
Chr7:52564364 |
GA |
G |
1bp_deletion | frameshift_variant | 34 | A16,A19,A20,A7,B107,B110,B130,B131,B135,B16,B18,B2,B23,B27,B28,B49,B55,B6,B62,B63,B71,B72,B73,B78,B83,C18,C38,C41,C50,C56,C63,C67,C76,C9 |
Chr7:52564390 |
A |
ACC |
2bp_insertion | frameshift_variant | 23 | A10,A14,B106,B11,B111,B12,B127,B131,B140,B21,B32,B35,B4,B46,B68,B88,C10,C25,C34,C43,C54,C85,D4 |
Chr7:52564393 |
CAG |
C |
2bp_deletion | frameshift_variant | 11 | B102,B107,B20,B23,B39,B7,B75,C28,C49,C60,C65 |
Chr7:52564397 |
TG |
T |
1bp_deletion | frameshift_variant | 23 | A10,A14,B106,B11,B111,B12,B127,B131,B140,B17,B21,B32,B35,B4,B46,B68,B88,C10,C25,C34,C43,C54,C85 |
Chr7:52564410 |
GTT |
G |
2bp_deletion | frameshift_variant | 27 | B100,B102,B107,B113,B114,B118,B130,B20,B23,B31,B39,B7,B75,B79,B90,B97,C12,C28,C49,C53,C58,C60,C65,C66,C68,C79,C82 |
Chr7:52564437 |
CT |
C |
1bp_deletion | frameshift_variant | 2 | B105,B47 |
Chr7:52564437 |
CT |
C |
1bp_deletion | CDS_variant | 2 | B105,B47 |
Chr7:52564467 |
AT |
A |
1bp_deletion | frameshift_variant | 32 | A16,A19,A20,B107,B110,B111,B131,B135,B16,B2,B23,B27,B28,B48,B49,B55,B6,B62,B63,B72,B73,B78,B83,C18,C41,C56,C63,C67,C76,C9,D2,D4 |
Chr7:52564500 |
AAT |
A |
2bp_deletion | frameshift_variant | 4 | B18,B23,B71,C83 |
Chr7:52564500 |
AAT |
A |
2bp_deletion | CDS_variant | 4 | B18,B23,B71,C83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775411.1PF00931
NB-ARC 115-275 aa
PF13173
AAA_14 126-237 aa
PF23559
WHD_DRP 369-431 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775411.1 |
Pfam | PF00931 |
NB-ARC | Domain | 115 | 275 | 4.3e-45 | 154.1 | NB-ARC domain |
XP_057775411.1 |
Pfam | PF13173 |
AAA_14 | Family | 126 | 237 | 1.6e-06 | 28.8 | AAA domain |
XP_057775411.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 369 | 431 | 4.3e-16 | 59.4 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。