Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004103`

染色体: Chr07 坐标: 52578023-52598767 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004103`
名称	SmilChr07G004103
描述	lysine-specific demethylase JMJ17
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	52578023 - 52598767 / `-`

ID 对照

NCBI Gene ID	`LOC130994769`
GeneID	`130994769`
locus_tag	`-`
NCBI Name	`LOC130994769`
原始查询	`SmilChr07G004103`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	lysine-specific demethylase JMJ17
产物	lysine-specific demethylase JMJ17
Arabidopsis	`AT1G63490` (AT1G63490) transcription factor jumonji (jmjC) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842655] identity=50.6; qcov=0.737; evalue=0; confidence=high
Rice	`Os06g0731600` - identity=50.8; qcov=0.568; evalue=0; confidence=medium
GO	GO:0003677 (DNA binding); GO:0005634 (nucleus); GO:0006338 (chromatin remodeling); GO:0032452 (histone demethylase activity)
KEGG	-
Pfam	PF00628 (PHD); PF01388 (ARID); PF02373 (JmjC); PF02375 (JmjN); PF02928 (zf-C5HC2); PF08429 (PLU-1)
InterPro	-
eggNOG	-
NR	GeneID:130994769

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057775812.1`
2	Chromosome	染色体	0.40000	`XP_057775815.1`
3	Nucleoplasm	核质	0.20000	`XP_057775812.1`
4	Cytosol	细胞质基质	0.20000	`XP_057775812.1`
5	Centromere	着丝粒	0.00000	`XP_057775812.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:52578144`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr7:52578229`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,C34
`Chr7:52578272`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr7:52579530`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B76,C77
`Chr7:52579608`	`C`	`T`	EMS_canonical_SNV	stop_gained	55	A19,A24,B1,B102,B103,B109,B111,B118,B119,B122,B126,B128,B129,B13,B134,B15,B17,B18,B21,B23,B26,B37,B46,B47,B49,B57,B60,B61,B79,B80,B81,B85,B94,C10,C12,C14,C16,C19,C30,C33,C4,C45,C50,C58,C6,C61,C66,C72,C73,C75,C77,C78,C8,C82,D3
`Chr7:52579780`	`TTC`	`T`	2bp_deletion	frameshift_variant	3	B117,B59,D5
`Chr7:52579780`	`TTC`	`T`	2bp_deletion	CDS_variant	3	B117,B59,D5
`Chr7:52579785`	`A`	`AGC`	2bp_insertion	frameshift_variant	4	B117,B24,B59,D5
`Chr7:52579785`	`A`	`AGC`	2bp_insertion	CDS_variant	4	B117,B24,B59,D5
`Chr7:52579809`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B109,B53,B97,C40,C45
`Chr7:52579989`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr7:52581501`	`T`	`TGA`	2bp_insertion	frameshift_variant	15	A13,B111,B118,B120,B2,B47,B57,B87,B94,C19,C22,C4,C45,C58,C78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775812.1

1840 aa

920

1840

JmjN

ARID

PHD

JmjC

zf-C5HC2

PLU-1

PHD

PF02375 JmjN 35-68 aa PF01388 ARID 105-191 aa PF00628 PHD 250-294 aa PF02373 JmjC 420-536 aa PF02928 zf-C5HC2 629-679 aa PF08429 PLU-1 894-1196 aa PF00628 PHD 1710-1750 aa

XP_057775813.1

1840 aa

920

1840

JmjN

ARID

PHD

JmjC

zf-C5HC2

PLU-1

PHD

PF02375 JmjN 35-68 aa PF01388 ARID 105-191 aa PF00628 PHD 250-294 aa PF02373 JmjC 420-536 aa PF02928 zf-C5HC2 629-679 aa PF08429 PLU-1 894-1196 aa PF00628 PHD 1710-1750 aa

XP_057775815.1

1837 aa

918

1837

JmjN

ARID

PHD

JmjC

zf-C5HC2

PLU-1

PHD

PF02375 JmjN 35-68 aa PF01388 ARID 105-191 aa PF00628 PHD 250-294 aa PF02373 JmjC 420-536 aa PF02928 zf-C5HC2 629-679 aa PF08429 PLU-1 894-1196 aa PF00628 PHD 1707-1747 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775812.1`	Pfam	`PF02375`	JmjN	Family	35	68	1.2e-17	64.1	jmjN domain
`XP_057775812.1`	Pfam	`PF01388`	ARID	Domain	105	191	2.4e-12	47.8	ARID/BRIGHT DNA binding domain
`XP_057775812.1`	Pfam	`PF00628`	PHD	Domain	250	294	1.1e-18	67.7	PHD-finger
`XP_057775812.1`	Pfam	`PF02373`	JmjC	Domain	420	536	1.9e-43	148.3	JmjC domain, hydroxylase
`XP_057775812.1`	Pfam	`PF02928`	zf-C5HC2	Domain	629	679	3.2e-15	56.9	C5HC2 zinc finger
`XP_057775812.1`	Pfam	`PF08429`	PLU-1	Family	894	1196	8.6e-30	104.8	PLU-1-like protein
`XP_057775812.1`	Pfam	`PF00628`	PHD	Domain	1710	1750	1.1e-18	67.7	PHD-finger
`XP_057775813.1`	Pfam	`PF02375`	JmjN	Family	35	68	1.2e-17	64.1	jmjN domain
`XP_057775813.1`	Pfam	`PF01388`	ARID	Domain	105	191	2.4e-12	47.8	ARID/BRIGHT DNA binding domain
`XP_057775813.1`	Pfam	`PF00628`	PHD	Domain	250	294	1.1e-18	67.7	PHD-finger
`XP_057775813.1`	Pfam	`PF02373`	JmjC	Domain	420	536	1.9e-43	148.3	JmjC domain, hydroxylase
`XP_057775813.1`	Pfam	`PF02928`	zf-C5HC2	Domain	629	679	3.2e-15	56.9	C5HC2 zinc finger
`XP_057775813.1`	Pfam	`PF08429`	PLU-1	Family	894	1196	8.6e-30	104.8	PLU-1-like protein
`XP_057775813.1`	Pfam	`PF00628`	PHD	Domain	1710	1750	1.1e-18	67.7	PHD-finger
`XP_057775815.1`	Pfam	`PF02375`	JmjN	Family	35	68	1.2e-17	64.1	jmjN domain
`XP_057775815.1`	Pfam	`PF01388`	ARID	Domain	105	191	2.4e-12	47.8	ARID/BRIGHT DNA binding domain
`XP_057775815.1`	Pfam	`PF00628`	PHD	Domain	250	294	1.1e-18	67.7	PHD-finger
`XP_057775815.1`	Pfam	`PF02373`	JmjC	Domain	420	536	1.9e-43	148.3	JmjC domain, hydroxylase
`XP_057775815.1`	Pfam	`PF02928`	zf-C5HC2	Domain	629	679	3.2e-15	56.9	C5HC2 zinc finger
`XP_057775815.1`	Pfam	`PF08429`	PLU-1	Family	894	1196	1.2e-29	104.4	PLU-1-like protein
`XP_057775815.1`	Pfam	`PF00628`	PHD	Domain	1707	1747	1.1e-18	67.7	PHD-finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057919830.1
AGAATTTTAACCTAAACAGTAGACTAAAAACTACCTTAAAGAAGAAATCCATAACGAGATTTGCCTTTTCCTCTCTTTCAACTGCTCTCAAAATATATAGATACACTATAGACACACTGGAAGATGCAATTCGATTACGAGCTGGAATAAGATTGAGAGCCCTAAGGATTCTTTTCTCGGAAGTTTGAAGCCCTAGAGTTCGCGGCTTTTGCTTTATTGATTGTTTATGTAGCTCATATTATGTAGTTTTTAACTGAGGT...

XM_057919829.1
ATTTTAACCTAAACAGTAGACTAAAAACTACCTTAAAGAAGAAATCCATAACGAGATTTGCCTTTTCCTCTCTTTCAACTGCTCTCAAAATATATAGATACACTATAGACACACTGGAAGATGCAATTCGATTACGAGCTGGAATAAGATTGAGAGCCCTAAGGATTCTTTTCTCGGAAGTTTGAAGCCCTAGAGTTCGCGGGTATTCAATTTGCTTGAATTCTAGTTCACTGTGAACTGAATTTTGATTTTGCCAATTT...

CDS

3 records

下载 CDS FASTA

LOC130994769
ATGGGAGGGAGGACTAGGAAAGTGGAGAAAGGGGTTTTAGGTGGAGGGAGTGGAGGTTTATTGGGCGGGAGTGACTGTGAGTCGTTAAATGTGCCGTCTGGTCCGGTGTTTTATCCGAGTGAGGAGGAATTTAAGGACCCTTTGAAGTATATATACAAGATCAGGCCGGAAGCTGAGCCATATGGGATTTGTAAGATTGTTCCACCGGTGAGTTGGAAACCCCCGTTTGCGCTGGACATGGAGTCGTTCACGTTTGGGAC...

Protein

3 records

下载 Protein FASTA

XP_057775812.1
MGGRTRKVEKGVLGGGSGGLLGGSDCESLNVPSGPVFYPSEEEFKDPLKYIYKIRPEAEPYGICKIVPPVSWKPPFALDMESFTFGTKTQAIHQLQARCAPCDPKTFRLEYNRFLEEHCGKKARKRIVFEGQDLDLCKLFNAVKRYGGYDNVAKMKKWGDVFRFIRPGAKISACSKHVLAQLYLEHLIEYEEYFCQLNKGKVKSCKRGINGSKKCELGVETSGIKRRRKNKEGDRVEIHKVEDKELDQICEQCKSGFHGD...

XP_057775813.1
MGGRTRKVEKGVLGGGSGGLLGGSDCESLNVPSGPVFYPSEEEFKDPLKYIYKIRPEAEPYGICKIVPPVSWKPPFALDMESFTFGTKTQAIHQLQARCAPCDPKTFRLEYNRFLEEHCGKKARKRIVFEGQDLDLCKLFNAVKRYGGYDNVAKMKKWGDVFRFIRPGAKISACSKHVLAQLYLEHLIEYEEYFCQLNKGKVKSCKRGINGSKKCELGVETSGIKRRRKNKEGDRVEIHKVEDKELDQICEQCKSGFHGD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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