Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004132`

染色体: Chr07 坐标: 53044930-53046428 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004132`
名称	SmilChr07G004132
描述	uncharacterized SmilChr07G004132
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	53044930 - 53046428 / `-`

ID 对照

NCBI Gene ID	`LOC130994869`
GeneID	`130994869`
locus_tag	`-`
NCBI Name	`LOC130994869`
原始查询	`SmilChr07G004132`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box associated ubiquitination effector family protein [Source:NCBI gene (formerly Entrezgene);Acc:842735]; symbol=AT1G64295; hit=AT1G64295; species=arabidopsis; confidence=low
产物	F-box associated ubiquitination effector family protein [Source:NCBI gene (formerly Entrezgene);Acc:842735]; symbol=AT1G64295; hit=AT1G64295; species=arabidopsis; confidence=low
Arabidopsis	`AT1G64295` (AT1G64295) F-box associated ubiquitination effector family protein [Source:NCBI gene (formerly Entrezgene);Acc:842735] identity=27.8; qcov=0.805; evalue=9.31e-21; confidence=low
Rice	`Os10g0391200` (OsFbox550) - identity=27.1; qcov=0.292; evalue=1.2e-06; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:130994869

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057775963.1`
2	Nucleus	细胞核	0.40000	`XP_057775963.1`
3	Cytosol	细胞质基质	0.20000	`XP_057775963.1`
4	Cell membrane	细胞膜	0.20000	`XP_057775963.1`
5	Chromosome	染色体	0.00000	`XP_057775963.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:53045158`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B60,C10,C46
`Chr7:53045175`	`A`	`AAG`	2bp_insertion	frameshift_variant	1	B60
`Chr7:53045175`	`A`	`AAG`	2bp_insertion	CDS_variant	1	B60
`Chr7:53045327`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr7:53045503`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr7:53045518`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr7:53045522`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B65,C18
`Chr7:53045566`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B47,B95,C48,C5
`Chr7:53045570`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B90,C29
`Chr7:53045593`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr7:53045628`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr7:53045644`	`CA`	`C`	1bp_deletion	frameshift_variant	6	B125,B95,C15,C2,C20,C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775963.1

456 aa

228

456

F-box-like

F-box

PF12937 F-box-like 9-45 aa PF00646 F-box 10-43 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775963.1`	Pfam	`PF12937`	F-box-like	Domain	9	45	3.6e-07	30.5	F-box-like
`XP_057775963.1`	Pfam	`PF00646`	F-box	Domain	10	43	2.3e-07	31.2	F-box domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919980.1
ATTTTCAACAAGAAAGATAGAGAAAGAGAGAGATGGGGTCTGCGGCGTCTACCTTAGCAGAATTACCGTCGGAGTTGATCTTCGAGATTCTAAGCCGAACGTCGTTGGAAACCCTAGAACGATGCAAGGCGGTTTCAAAGAGTTGGAAGCATATTATATATGAATCCACTTTTCTCCCTCTCCACTGTCAAAGAACAAATTCCCTTTTCGGCTATTTCTTCCAAGACGTCAGACACATTGCTAAATTTCCATCGGCGTTG...

CDS

1 records

下载 CDS FASTA

LOC130994869
ATGGGGTCTGCGGCGTCTACCTTAGCAGAATTACCGTCGGAGTTGATCTTCGAGATTCTAAGCCGAACGTCGTTGGAAACCCTAGAACGATGCAAGGCGGTTTCAAAGAGTTGGAAGCATATTATATATGAATCCACTTTTCTCCCTCTCCACTGTCAAAGAACAAATTCCCTTTTCGGCTATTTCTTCCAAGACGTCAGACACATTGCTAAATTTCCATCGGCGTTGGTATCCTCCGCCCCCGGTGCCGCCGCTGCCGC...

Protein

1 records

下载 Protein FASTA

XP_057775963.1
MGSAASTLAELPSELIFEILSRTSLETLERCKAVSKSWKHIIYESTFLPLHCQRTNSLFGYFFQDVRHIAKFPSALVSSAPGAAAAAAINRTWTRDNRKILASCDQGILCCEREDRCRCDSCNNKRFFACKPATSQWQGLPNPKLRYETDAVAIVVVRSTPLRYIIASLYNSGIMQHNCDIFDSEKWAWERIECAAPYGEIVESCRPAITTAGRFFHWLTVSGNVLTLDVKRRSFRCSPLPCDPACKSKVLVEYEGGLGF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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