Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004142`

染色体: Chr07 坐标: 53220727-53223971 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004142`
名称	SmilChr07G004142
描述	uncharacterized SmilChr07G004142
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	53220727 - 53223971 / `-`

ID 对照

NCBI Gene ID	`LOC130994835`
GeneID	`130994835`
locus_tag	`-`
NCBI Name	`LOC130994835`
原始查询	`SmilChr07G004142`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819198]; symbol=TRM13; hit=AT2G45900; species=arabidopsis; confidence=low
产物	Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819198]; symbol=TRM13; hit=AT2G45900; species=arabidopsis; confidence=low
Arabidopsis	`AT2G45900` (TRM13) Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819198] identity=31.3; qcov=0.321; evalue=3.61e-19; confidence=low
Rice	`Os10g0550000` (OSJNBa0082M15.1) - identity=26.6; qcov=0.401; evalue=2.36e-13; confidence=low
GO	-
KEGG	-
Pfam	PF14309 (DUF4378)
InterPro	-
eggNOG	-
NR	GeneID:130994835

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057775903.1`
2	Cytoplasm	细胞质	0.40000	`XP_057775903.1`
3	Nucleus	细胞核	0.20000	`XP_057775903.1`
4	Cytosol	细胞质基质	0.20000	`XP_057775903.1`
5	Chromosome	染色体	0.00000	`XP_057775903.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:53220899`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B44,C30,C78
`Chr7:53221960`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A25,B15,C18,C28
`Chr7:53222125`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A3,B128
`Chr7:53222148`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B120
`Chr7:53222266`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B10,B5,C37
`Chr7:53222642`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B88,D4
`Chr7:53223469`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C40
`Chr7:53223469`	`TG`	`T`	1bp_deletion	CDS_variant	1	C40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775903.1

667 aa

334

667

DUF4378

PF14309 DUF4378 517-656 aa

XP_057775904.1

666 aa

333

666

DUF4378

PF14309 DUF4378 516-655 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775903.1`	Pfam	`PF14309`	DUF4378	Domain	517	656	2e-17	64.8	LONGIFOLIA 1/2-like C-terminal domain
`XP_057775904.1`	Pfam	`PF14309`	DUF4378	Domain	516	655	1.9e-17	64.8	LONGIFOLIA 1/2-like C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057919920.1
TTTATAGTGGTTGAACCAAAATCAAACACTTAGCCAAATATTTGTTTGCTCATGGTGGCCACTCTCACAAATGTCACACCCTTCACAAATAAATGCCTGCTTCTAGTAATACCAAATCTCTGCATACAAACAAACTTTCCAATCTCACAAACCCAACTGCAGCTACCCCATCCAAACCACCCCCCAAACCAATATATTATTCTTGTTTGGTTACTTGCAAGAATGCATATATAGTTTCTTGGGTTTCTTTTCTATCAAGG...

XM_057919921.1
TTAGCCAAATATTTGTTTGCTCATGGTGGCCACTCTCACAAATGTCACACCCTTCACAAATAAATGCCTGCTTCTAGTAATACCAAATCTCTGCATACAAACAAACTTTCCAATCTCACAAACCCAACTGCAGCTACCCCATCCAAACCACCCCCCAAACCAATATATTATTCTTGTTTGGTTACTTGCAAGAATGCATATATAGTTTCTTGGGTTTCTTTTCTATCAAGGTGTGTCTCACAAGATTCACGAAAATTCAT...

CDS

2 records

下载 CDS FASTA

LOC130994835
ATGAAGTGTGAAGAAGTGAGAGTATTCAAGTGTATGCATCCATTGTATTTTATTCTTGACTCCCAAAATGGCTGGGCCTCTTCTCATGAGATGATTGCAATGATAGATCATCGCACCAGCTTTGATGAAGAATGTCGAAAAATTCAATATGAAGCAGAGTTTGCAACAAGTAGTAGAGCTAATGCTAGTGATAGAAGCTTGAAGGGTCTAACTCGAGAAGATGCACACATTCTGCAGCAGAGAAACAAAGACAGGACTGA...

LOC130994835
ATGAAGTGTGAAGAAGTGAGAGTATTCAAGTGTATGCATCCATTGTATTTTATTCTTGACTCCCAAAATGGCTGGGCCTCTTCTCATGAGATGATTGCAATGATAGAAGATCATCGCACCAGCTTTGATGAAGAATGTCGAAAAATTCAATATGAAGCAGAGTTTGCAACAAGTAGTAGAGCTAATGCTAGTGATAGAAGCTTGAAGGGTCTAACTCGAGAAGATGCACACATTCTGCAGCAGAGAAACAAAGACAGGAC...

Protein

2 records

下载 Protein FASTA

XP_057775903.1
MKCEEVRVFKCMHPLYFILDSQNGWASSHEMIAMIEDHRTSFDEECRKIQYEAEFATSSRANASDRSLKGLTREDAHILQQRNKDRTDPQLVVHPMAATKASPRACMCQSNDTTSSTHRRPPPPSETPSNKAAVGSRFESKPFSDALQVLSSDKDFLFLSEPQNCIKNLESDKQTCPKSNTALTLKAELQKRQDSGRFACHCSSGQPGGGSRVKTLREIKRKLKHTFGSSRRKDADQLPRFRFHGCIYSGVETREPLSST...

XP_057775904.1
MKCEEVRVFKCMHPLYFILDSQNGWASSHEMIAMIDHRTSFDEECRKIQYEAEFATSSRANASDRSLKGLTREDAHILQQRNKDRTDPQLVVHPMAATKASPRACMCQSNDTTSSTHRRPPPPSETPSNKAAVGSRFESKPFSDALQVLSSDKDFLFLSEPQNCIKNLESDKQTCPKSNTALTLKAELQKRQDSGRFACHCSSGQPGGGSRVKTLREIKRKLKHTFGSSRRKDADQLPRFRFHGCIYSGVETREPLSSTT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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