当前解析结果
SmilChr07G004152| 统一新 Gene ID | SmilChr07G004152 |
|---|---|
| 名称 | SmilChr07G004152 |
| 描述 | putative late blight resistance protein homolog R1A-4 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 53379713 - 53382957 / + |
| NCBI Gene ID | LOC130994807 |
|---|---|
| GeneID | 130994807 |
| locus_tag | - |
| NCBI Name | LOC130994807 |
| 原始查询 | SmilChr07G004152 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-4 |
| 产物 | putative late blight resistance protein homolog R1A-4 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=33.1; qcov=0.705; evalue=3.51e-64; confidence=low |
| Rice | Os08g0424700 (P0456B03.103)- identity=32.6; qcov=0.714; evalue=2.82e-68; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994807 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057775859.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057775858.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057775859.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775859.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775859.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:53380014 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A8,B14 |
Chr7:53380020 |
T |
TAC |
2bp_insertion | frameshift_variant | 7 | B112,B124,B71,B98,C16,C46,C48 |
Chr7:53380021 |
CGT |
C |
2bp_deletion | frameshift_variant | 7 | B112,B124,B71,B98,C16,C46,C48 |
Chr7:53380050 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B120,C36 |
Chr7:53380054 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | C32,C68 |
Chr7:53380054 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr7:53380055 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A8,B14 |
Chr7:53380066 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,B88 |
Chr7:53380070 |
A |
AG |
1bp_insertion | frameshift_variant | 61 | A11,A13,A22,A23,A24,A25,B10,B100,B103,B106,B107,B113,B114,B125,B126,B131,B134,B138,B15,B30,B40,B49,B5,B57,B58,B60,B66,B70,B76,B77,B79,B80,B84,B86,B9,B94,B98,C13,C15,C18,C2,C20,C24,C27,C28,C33,C36,C37,C41,C53,C58,C62,C7,C70,C76,C78,C79,C80,C83,C85,C9 |
Chr7:53380119 |
AGG |
A |
2bp_deletion | frameshift_variant | 2 | B112,B88 |
Chr7:53380119 |
AGG |
A |
2bp_deletion | CDS_variant | 2 | B112,B88 |
Chr7:53380133 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B112,B88,C2,C66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775858.1PF00931
NB-ARC 201-362 aa
PF23559
WHD_DRP 454-518 aa
XP_057775859.1PF00931
NB-ARC 201-362 aa
PF23559
WHD_DRP 454-518 aa
XP_057775860.1PF00931
NB-ARC 201-362 aa
PF23559
WHD_DRP 454-518 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775858.1 |
Pfam | PF00931 |
NB-ARC | Domain | 201 | 362 | 1.1e-44 | 152.8 | NB-ARC domain |
XP_057775858.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 454 | 518 | 1.1e-16 | 61.3 | Disease resistance protein Winged helix domain |
XP_057775859.1 |
Pfam | PF00931 |
NB-ARC | Domain | 201 | 362 | 9.5e-45 | 153.0 | NB-ARC domain |
XP_057775859.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 454 | 518 | 9.2e-17 | 61.6 | Disease resistance protein Winged helix domain |
XP_057775860.1 |
Pfam | PF00931 |
NB-ARC | Domain | 201 | 362 | 7.3e-45 | 153.4 | NB-ARC domain |
XP_057775860.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 454 | 518 | 6.9e-17 | 62.0 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。