当前解析结果
SmilChr07G004154| 统一新 Gene ID | SmilChr07G004154 |
|---|---|
| 名称 | SmilChr07G004154 |
| 描述 | secreted RxLR effector protein 161-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 53396284 - 53396862 / + |
| NCBI Gene ID | LOC130994399 |
|---|---|
| GeneID | 130994399 |
| locus_tag | - |
| NCBI Name | LOC130994399 |
| 原始查询 | SmilChr07G004154 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | secreted RxLR effector protein 161-like |
| 产物 | secreted RxLR effector protein 161-like |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=40.1; qcov=0.766; evalue=7.64e-33; confidence=medium |
| Rice | Os08g0125300- identity=52.4; qcov=0.995; evalue=3.46e-58; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994399 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057775425.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057775425.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057775425.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057775425.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057775425.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:53396289 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A22,C59 |
Chr7:53396334 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A10,C54 |
Chr7:53396361 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B128,B47 |
Chr7:53396362 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B133,D6 |
Chr7:53396364 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B133,C35,D6 |
Chr7:53396380 |
GA |
G |
1bp_deletion | frameshift_variant | 3 | A24,B53,D4 |
Chr7:53396380 |
GA |
G |
1bp_deletion | CDS_variant | 3 | A24,B53,D4 |
Chr7:53396407 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr7:53396415 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,B133,C43,D6 |
Chr7:53396450 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr7:53396477 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A3,C19,C87 |
Chr7:53396508 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A9,B108,B22 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。