当前解析结果
SmilChr07G004157| 统一新 Gene ID | SmilChr07G004157 |
|---|---|
| 名称 | SmilChr07G004157 |
| 描述 | putative late blight resistance protein homolog R1B-17 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 53409694 - 53413065 / - |
| NCBI Gene ID | LOC130994812 |
|---|---|
| GeneID | 130994812 |
| locus_tag | - |
| NCBI Name | LOC130994812 |
| 原始查询 | SmilChr07G004157 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-17 |
| 产物 | putative late blight resistance protein homolog R1B-17 |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=25.4; qcov=0.982; evalue=4.45e-37; confidence=low |
| Rice | Os10g0183000 (OsLSR)- identity=23.8; qcov=1.02; evalue=8.54e-38; confidence=weak |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994812 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057775864.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057775864.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057775864.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057775864.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057775864.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:53410060 |
AG |
A |
1bp_deletion | frameshift_variant | 131 | A18,A19,A2,A20,A21,A22,A23,A24,A4,A6,A7,B100,B102,B107,B108,B11,B110,B111,B112,B113,B114,B117,B118,B119,B121,B123,B124,B130,B131,B132,B134,B136,B138,B14,B15,B16,B18,B19,B20,B23,B24,B27,B28,B29,B3,B33,B34,B35,B37,B38,B39,B40,B41,B42,B43,B44,B47,B50,B53,B54,B57,B58,B59,B61,B62,B64,B66,B69,B71,B75,B76,B77,B8,B80,B81,B82,B84,B85,B87,B88,B89,B9,B91,C1,C14,C17,C19,C2,C21,C24,C25,C26,C27,C28,C30,C31,C32,C33,C36,C38,C4,C40,C42,C44,C45,C47,C48,C5,C52,C54,C56,C59,C63,C64,C65,C66,C68,C69,C72,C73,C74,C75,C76,C82,C83,D1,D11,D4,D5,D6,D8 |
Chr7:53410064 |
A |
AC |
1bp_insertion | frameshift_variant | 55 | A15,A16,A22,B1,B102,B103,B109,B122,B126,B131,B137,B138,B139,B16,B22,B23,B33,B4,B44,B45,B50,B51,B52,B63,B65,B66,B68,B7,B74,B75,B84,B85,B92,B97,B98,B99,C10,C14,C16,C21,C28,C3,C35,C38,C47,C49,C58,C68,C72,C8,C81,C83,C9,D3,D9 |
Chr7:53410089 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B125,B65,D6 |
Chr7:53410096 |
T |
TAG |
2bp_insertion | frameshift_variant | 1 | B106 |
Chr7:53410096 |
T |
TAG |
2bp_insertion | CDS_variant | 1 | B106 |
Chr7:53410112 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B138,B65,C49,C68,C81 |
Chr7:53410126 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A1,B13,C6,C84 |
Chr7:53410141 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B52,C29 |
Chr7:53410174 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,B128,C4,C87 |
Chr7:53410182 |
A |
AAT |
2bp_insertion | frameshift_variant | 2 | B106,C71 |
Chr7:53410182 |
A |
AAT |
2bp_insertion | CDS_variant | 2 | B106,C71 |
Chr7:53410184 |
ATC |
A |
2bp_deletion | frameshift_variant | 2 | B106,C71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775864.1PF00931
NB-ARC 158-326 aa
PF23598
LRR_14 538-829 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775864.1 |
Pfam | PF00931 |
NB-ARC | Domain | 158 | 326 | 4.9e-29 | 101.8 | NB-ARC domain |
XP_057775864.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 538 | 829 | 1.4e-11 | 44.5 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。