Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004171`

染色体: Chr07 坐标: 53632477-53643339 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004171`
名称	SmilChr07G004171
描述	puromycin-sensitive aminopeptidase-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	53632477 - 53643339 / `-`

ID 对照

NCBI Gene ID	`LOC130994798`
GeneID	`130994798`
locus_tag	`-`
NCBI Name	`LOC130994798`
原始查询	`SmilChr07G004171`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	puromycin-sensitive aminopeptidase-like
产物	puromycin-sensitive aminopeptidase-like
Arabidopsis	`AT1G63770` (AT1G63770) Peptidase M1 family protein [Source:NCBI gene (formerly Entrezgene);Acc:842681] identity=81.5; qcov=1; evalue=0; confidence=high
Rice	`Os08g0562700` - identity=77.8; qcov=0.458; evalue=0; confidence=medium
GO	GO:0006508 (proteolysis); GO:0008237 (metallopeptidase activity); GO:0008270 (zinc ion binding); GO:0009507 (chloroplast)
KEGG	smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF01433 (Peptidase_M1); PF11940 (DUF3458); PF17432 (DUF3458_C); PF17900 (Peptidase_M1_N)
InterPro	-
eggNOG	-
NR	GeneID:130994798

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057775839.1`
2	Cytosol	细胞质基质	1.00000	`XP_057775839.1`
3	Nucleus	细胞核	0.40000	`XP_057775841.1`
4	Nucleoplasm	核质	0.40000	`XP_057775841.1`
5	Chromosome	染色体	0.00000	`XP_057775839.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:53632980`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B135,B72
`Chr7:53633019`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,B103,B125
`Chr7:53633046`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A14,B31,B4
`Chr7:53633049`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr7:53633070`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr7:53633073`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A24,B125
`Chr7:53633217`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B135,B72
`Chr7:53633879`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B71,C16,C57
`Chr7:53633898`	`G`	`GT`	1bp_insertion	frameshift_variant	3	A20,B119,C7
`Chr7:53633898`	`G`	`GT`	1bp_insertion	CDS_variant	3	A20,B119,C7
`Chr7:53634098`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:53634107`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B121,B25

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775839.1

979 aa

490

979

Peptidase_M1_N

Peptidase_M1

DUF3458

DUF3458_C

PF17900 Peptidase_M1_N 116-281 aa PF01433 Peptidase_M1 322-531 aa PF11940 DUF3458 539-652 aa PF17432 DUF3458_C 656-978 aa

XP_057775841.1

887 aa

444

887

Peptidase_M1_N

Peptidase_M1

DUF3458

DUF3458_C

PF17900 Peptidase_M1_N 24-189 aa PF01433 Peptidase_M1 230-439 aa PF11940 DUF3458 447-560 aa PF17432 DUF3458_C 564-886 aa

XP_057775842.1

887 aa

444

887

Peptidase_M1_N

Peptidase_M1

DUF3458

DUF3458_C

PF17900 Peptidase_M1_N 24-189 aa PF01433 Peptidase_M1 230-439 aa PF11940 DUF3458 447-560 aa PF17432 DUF3458_C 564-886 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775839.1`	Pfam	`PF17900`	Peptidase_M1_N	Domain	116	281	5.4e-14	53.4	Peptidase M1 N-terminal domain
`XP_057775839.1`	Pfam	`PF01433`	Peptidase_M1	Domain	322	531	3.7e-52	177.8	Peptidase family M1 domain
`XP_057775839.1`	Pfam	`PF11940`	DUF3458	Domain	539	652	6e-28	97.8	Domain of unknown function (DUF3458) Ig-like fold
`XP_057775839.1`	Pfam	`PF17432`	DUF3458_C	Repeat	656	978	1.7e-124	416.1	Domain of unknown function (DUF3458_C) ARM repeats
`XP_057775841.1`	Pfam	`PF17900`	Peptidase_M1_N	Domain	24	189	4.6e-14	53.7	Peptidase M1 N-terminal domain
`XP_057775841.1`	Pfam	`PF01433`	Peptidase_M1	Domain	230	439	3e-52	178.1	Peptidase family M1 domain
`XP_057775841.1`	Pfam	`PF11940`	DUF3458	Domain	447	560	5.2e-28	98.0	Domain of unknown function (DUF3458) Ig-like fold
`XP_057775841.1`	Pfam	`PF17432`	DUF3458_C	Repeat	564	886	1.4e-124	416.4	Domain of unknown function (DUF3458_C) ARM repeats
`XP_057775842.1`	Pfam	`PF17900`	Peptidase_M1_N	Domain	24	189	4.6e-14	53.7	Peptidase M1 N-terminal domain
`XP_057775842.1`	Pfam	`PF01433`	Peptidase_M1	Domain	230	439	3e-52	178.1	Peptidase family M1 domain
`XP_057775842.1`	Pfam	`PF11940`	DUF3458	Domain	447	560	5.2e-28	98.0	Domain of unknown function (DUF3458) Ig-like fold
`XP_057775842.1`	Pfam	`PF17432`	DUF3458_C	Repeat	564	886	1.4e-124	416.4	Domain of unknown function (DUF3458_C) ARM repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057919859.1
CACTTTATATATATATATATATATATATATATATATATAATTGTTGTCAATAAAGGTCAACACATTACGTTTCCAGCACATAGGTTTTTTCTTGGAGATCTTGCGTTCTGATCATTTGATTTCATCCACAAACTATCAAGGTACGACGGAGCGTCCGTGTAACTGGGAATTCGGTAAAGAAAGTTTGTAGATACAGGCCATTCTTGTGCTCTGAGAATACCAATCGGAGGAATTGTCAGACACCGTATTACTCACTGCCT...

XM_057919856.1
TTATAACATTAATATATATGACCACAGATAAAGATACAAAGCTCACTCTCTTTTCCACTCAACTGGTTTCGGTTTCTTTGGCTGATTTTGCACTTTTGTAGTTTTAATCCGTCGTTTTTAGTTGGGTGGAAGATTGGATCTTTCTTGTAAACCATAGACACATATTACTGGAGTCAGCGTTGTGTGATTGTAAGATGTCACGATTGATTCTACCCAGCAAAGCTTCGAGCTTGTCGAGGACATGCCTCTTGGGTTTTGTC...

CDS

3 records

下载 CDS FASTA

LOC130994798
ATGTCACGATTGATTCTACCCAGCAAAGCTTCGAGCTTGTCGAGGACATGCCTCTTGGGTTTTGTCTCCTCCACACCTGTACGACGGAGCGTCCGTGTAACTGGGAATTCGGTAAAGAAAGTTTGTAGATACAGGCCATTCTTGTGCTCTGAGAATACCAATCGGAGGAATTGTCAGACACCGTATTACTCACTGCCTAGGGCTAGAAATATTGGAAGGAGGTTTATCTGCTCTGTAGCAACAGAACCACTACCGAAGCA...

LOC130994798
ATGGAGGCACCAAAAGAGATATTTCTGAAGGATTACAAACAACCTGATTATTTCTTTGAAAAGGTGGATTTGAAATTTCAGTTGGGCGAGGAAACAACATTTGTTTCTTCCAAAATTGCTGTCTCTCCCAGGGTTGAAGGTTGTTCGTCACCTCTAGTCTTGGATGGGGTAGATCTGAAACTGGTTTCTTTGAAGGTGAACGGAGAGGAACTGAAGGGAGATGATTTTCATGTTGATTCACGCCATCTGACACTTTCCTC...

Protein

3 records

下载 Protein FASTA

XP_057775839.1
MSRLILPSKASSLSRTCLLGFVSSTPVRRSVRVTGNSVKKVCRYRPFLCSENTNRRNCQTPYYSLPRARNIGRRFICSVATEPLPKQVEETNMEAPKEIFLKDYKQPDYFFEKVDLKFQLGEETTFVSSKIAVSPRVEGCSSPLVLDGVDLKLVSLKVNGEELKGDDFHVDSRHLTLSSPPSGKFTLEIVTEICPQKNTSLEGLYKSSGNFCTQCEAEGFRKITFYQDRPDIMAKYTCRIEGDKSLYPVLLSNGNLTEQG...

XP_057775841.1
MEAPKEIFLKDYKQPDYFFEKVDLKFQLGEETTFVSSKIAVSPRVEGCSSPLVLDGVDLKLVSLKVNGEELKGDDFHVDSRHLTLSSPPSGKFTLEIVTEICPQKNTSLEGLYKSSGNFCTQCEAEGFRKITFYQDRPDIMAKYTCRIEGDKSLYPVLLSNGNLTEQGELEGGKHYAVWEDPFVKPCYLFALVAGQLESRDDTFITRSGRKVLLRIWTPAQDIPKTAHAMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器