Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004173`

染色体: Chr07 坐标: 53672621-53678812 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004173`
名称	SmilChr07G004173
描述	puromycin-sensitive aminopeptidase-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	53672621 - 53678812 / `-`

ID 对照

NCBI Gene ID	`LOC130994880`
GeneID	`130994880`
locus_tag	`-`
NCBI Name	`LOC130994880`
原始查询	`SmilChr07G004173`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	puromycin-sensitive aminopeptidase-like
产物	puromycin-sensitive aminopeptidase-like
Arabidopsis	`AT1G63770` (AT1G63770) Peptidase M1 family protein [Source:NCBI gene (formerly Entrezgene);Acc:842681] identity=79.5; qcov=0.974; evalue=6.6e-173; confidence=high
Rice	`Os08g0562700` - identity=76.1; qcov=0.971; evalue=1.19e-172; confidence=high
GO	GO:0008237 (metallopeptidase activity); GO:0008270 (zinc ion binding); GO:0009507 (chloroplast)
KEGG	-
Pfam	PF01433 (Peptidase_M1); PF17900 (Peptidase_M1_N)
InterPro	-
eggNOG	-
NR	GeneID:130994880

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057775980.1`
2	Cytoplasm	细胞质	1.00000	`XP_057775983.1`
3	Cytosol	细胞质基质	1.00000	`XP_057775983.1`
4	Chloroplast stroma	叶绿体基质	0.80000	`XP_057775982.1`
5	Mitochondrion	线粒体	0.40000	`XP_057775980.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:53673800`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	C59
`Chr7:53673800`	`TCA`	`T`	2bp_deletion	CDS_variant	1	C59
`Chr7:53674532`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B135,B72
`Chr7:53674570`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr7:53674598`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B13
`Chr7:53674598`	`TC`	`T`	1bp_deletion	CDS_variant	1	B13
`Chr7:53674600`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B134
`Chr7:53674718`	`AT`	`A`	1bp_deletion	frameshift_variant	6	B7,C17,C27,C47,C79,C84
`Chr7:53674731`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr7:53675055`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A24,B125
`Chr7:53675074`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr7:53675166`	`TC`	`T`	1bp_deletion	frameshift_variant	2	B108,B99

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775980.1

402 aa

201

402

Peptidase_M1_N

Peptidase_M1

PF17900 Peptidase_M1_N 116-281 aa PF01433 Peptidase_M1 322-393 aa

XP_057775981.1

398 aa

199

398

Peptidase_M1_N

Peptidase_M1

PF17900 Peptidase_M1_N 116-281 aa PF01433 Peptidase_M1 322-395 aa

XP_057775982.1

397 aa

198

397

Peptidase_M1_N

Peptidase_M1

PF17900 Peptidase_M1_N 134-276 aa PF01433 Peptidase_M1 317-388 aa

XP_057775983.1

310 aa

155

310

Peptidase_M1_N

Peptidase_M1

PF17900 Peptidase_M1_N 24-189 aa PF01433 Peptidase_M1 230-301 aa

XP_057775984.1

310 aa

155

310

Peptidase_M1_N

Peptidase_M1

PF17900 Peptidase_M1_N 24-189 aa PF01433 Peptidase_M1 230-301 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775980.1`	Pfam	`PF17900`	Peptidase_M1_N	Domain	116	281	2.7e-14	54.4	Peptidase M1 N-terminal domain
`XP_057775980.1`	Pfam	`PF01433`	Peptidase_M1	Domain	322	393	6.5e-14	52.8	Peptidase family M1 domain
`XP_057775981.1`	Pfam	`PF17900`	Peptidase_M1_N	Domain	116	281	2.7e-14	54.4	Peptidase M1 N-terminal domain
`XP_057775981.1`	Pfam	`PF01433`	Peptidase_M1	Domain	322	395	1.7e-14	54.7	Peptidase family M1 domain
`XP_057775982.1`	Pfam	`PF17900`	Peptidase_M1_N	Domain	134	276	9.9e-14	52.6	Peptidase M1 N-terminal domain
`XP_057775982.1`	Pfam	`PF01433`	Peptidase_M1	Domain	317	388	6.6e-14	52.8	Peptidase family M1 domain
`XP_057775983.1`	Pfam	`PF17900`	Peptidase_M1_N	Domain	24	189	1.5e-14	55.3	Peptidase M1 N-terminal domain
`XP_057775983.1`	Pfam	`PF01433`	Peptidase_M1	Domain	230	301	4.4e-14	53.3	Peptidase family M1 domain
`XP_057775984.1`	Pfam	`PF17900`	Peptidase_M1_N	Domain	24	189	1.5e-14	55.3	Peptidase M1 N-terminal domain
`XP_057775984.1`	Pfam	`PF01433`	Peptidase_M1	Domain	230	301	4.4e-14	53.3	Peptidase family M1 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057920000.1
AAATAGCATATATTCACTTTTTTTTTACAATTGCTGTCAATATAGGTCAACACATTGTCTCCAACACATAAGGTTTTTTCTTGGAGATCTTGTGCTCTGATCATTGATTTCATCCACAAACTATCAAGGTACGATGGAGCTTTTGCGTAACTGGGAATTCGGCAAAGAAAGTTTGTAGATACAGGCCATTCTTGTGCTCTGAGAACACCAATCGGAGGAATGGTCAGACACCGTATTACTCACTGCCTAGGGCTAGAACT...

XM_057920001.1
AAATAGCATATATTCACTTTTTTTTTACAATTGCTGTCAATATAGGTCAACACATTGTCTCCAACACATAAGGTTTTTTCTTGGAGATCTTGTGCTCTGATCATTGATTTCATCCACAAACTATCAAGGTACGATGGAGCTTTTGCGTAACTGGGAATTCGGCAAAGAAAGTTTGTAGATACAGGCCATTCTTGTGCTCTGAGAACACCAATCGGAGGAATGGTCAGACACCGTATTACTCACTGCCTGTAAGAGGGCTA...

CDS

5 records

下载 CDS FASTA

LOC130994880
ATGTCACGATTGATTCTACCAAGCAAAGCTTCGAGCTTGTCGAGGACATGCCTCTTGGGTTTTGTCTCCTCCACACCTGTACGATGGAGCTTTTGCGTAACTGGGAATTCGGCAAAGAAAGTTTGTAGATACAGGCCATTCTTGTGCTCTGAGAACACCAATCGGAGGAATGGTCAGACACCGTATTACTCACTGCCTAGGGCTAGAACTATTGGAAAGAGGTTTATCTGCTCTGTAGCAACAGAACCACTACCAAAGCA...

Protein

5 records

下载 Protein FASTA

XP_057775980.1
MSRLILPSKASSLSRTCLLGFVSSTPVRWSFCVTGNSAKKVCRYRPFLCSENTNRRNGQTPYYSLPRARTIGKRFICSVATEPLPKQVEETNMEAPKEIFLKDYKQPDYFFEKVDLKFQLGEETTFVSSKIVVSRRVEGCSSPLVLDGVDLKLVSLKVNGEELKEVDFLVDSRHLTLSSPPSGKFTVEIVTEICPQKNTSLRGLFKSSGNFCTQCEAEGFRKVTYYQDRPYIMAKYTCRIEGDKSLCPVLLSNGNLTEQG...

XP_057775981.1
MSRLILPSKASSLSRTCLLGFVSSTPVRWSFCVTGNSAKKVCRYRPFLCSENTNRRNGQTPYYSLPRARTIGKRFICSVATEPLPKQVEETNMEAPKEIFLKDYKQPDYFFEKVDLKFQLGEETTFVSSKIVVSRRVEGCSSPLVLDGVDLKLVSLKVNGEELKEVDFLVDSRHLTLSSPPSGKFTVEIVTEICPQKNTSLRGLFKSSGNFCTQCEAEGFRKVTYYQDRPYIMAKYTCRIEGDKSLCPVLLSNGNLTEQG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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