当前解析结果
SmilChr07G004174| 统一新 Gene ID | SmilChr07G004174 |
|---|---|
| 名称 | SmilChr07G004174 |
| 描述 | uncharacterized SmilChr07G004174 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 53689371 - 53693666 / + |
| NCBI Gene ID | LOC130994800 |
|---|---|
| GeneID | 130994800 |
| locus_tag | - |
| NCBI Name | LOC130994800 |
| 原始查询 | SmilChr07G004174 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Disease resistance protein (TIR-NBS class) [Source:NCBI gene (formerly Entrezgene);Acc:828443]; symbol=AT4G23440; hit=AT4G23440; species=arabidopsis; confidence=high |
| 产物 | Disease resistance protein (TIR-NBS class) [Source:NCBI gene (formerly Entrezgene);Acc:828443]; symbol=AT4G23440; hit=AT4G23440; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G23440 (AT4G23440)Disease resistance protein (TIR-NBS class) [Source:NCBI gene (formerly Entrezgene);Acc:828443] identity=63.5; qcov=0.963; evalue=0; confidence=high |
| Rice | Os01g0760400 (P0460E08.19)- identity=58.4; qcov=0.946; evalue=0; confidence=high |
| GO | GO:0000725 (recombinational repair); GO:0007165 (signal transduction); GO:0043531 (ADP binding) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13676 (TIR_2); PF25895 (WHD_plant_disease) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994800 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057775844.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057775844.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057775844.1 |
| 4 | Lipid droplet | 脂滴 | 0.20000 | XP_057775844.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057775844.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:53690648 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | D11 |
Chr7:53690648 |
AG |
A |
1bp_deletion | CDS_variant | 1 | D11 |
Chr7:53690717 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr7:53690878 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr7:53690950 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C14,C34 |
Chr7:53690978 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A24,B125 |
Chr7:53691047 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A15,A5,B102,C50 |
Chr7:53691069 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B131,B136,B95,B99 |
Chr7:53691147 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr7:53691211 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,B72 |
Chr7:53691455 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B108,B21,B37 |
Chr7:53691469 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A24,B125 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775844.1PF13676
TIR_2 152-230 aa
PF00931
NB-ARC 416-568 aa
PF25895
WHD_plant_disease 652-763 aa
XP_057775845.1PF13676
TIR_2 152-230 aa
PF00931
NB-ARC 416-568 aa
PF25895
WHD_plant_disease 652-763 aa
XP_057775846.1PF13676
TIR_2 152-230 aa
PF00931
NB-ARC 416-568 aa
PF25895
WHD_plant_disease 652-763 aa
XP_057775847.1PF13676
TIR_2 152-230 aa
PF00931
NB-ARC 416-568 aa
PF25895
WHD_plant_disease 652-763 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775844.1 |
Pfam | PF13676 |
TIR_2 | Domain | 152 | 230 | 1.8e-07 | 32.4 | TIR domain |
XP_057775844.1 |
Pfam | PF00931 |
NB-ARC | Domain | 416 | 568 | 2.1e-05 | 24.8 | NB-ARC domain |
XP_057775844.1 |
Pfam | PF25895 |
WHD_plant_disease | Domain | 652 | 763 | 2.3e-41 | 141.1 | Winged Helix Domain in plant disease resistance proteins |
XP_057775845.1 |
Pfam | PF13676 |
TIR_2 | Domain | 152 | 230 | 1.8e-07 | 32.4 | TIR domain |
XP_057775845.1 |
Pfam | PF00931 |
NB-ARC | Domain | 416 | 568 | 2.1e-05 | 24.8 | NB-ARC domain |
XP_057775845.1 |
Pfam | PF25895 |
WHD_plant_disease | Domain | 652 | 763 | 2.3e-41 | 141.1 | Winged Helix Domain in plant disease resistance proteins |
XP_057775846.1 |
Pfam | PF13676 |
TIR_2 | Domain | 152 | 230 | 1.8e-07 | 32.4 | TIR domain |
XP_057775846.1 |
Pfam | PF00931 |
NB-ARC | Domain | 416 | 568 | 2.1e-05 | 24.8 | NB-ARC domain |
XP_057775846.1 |
Pfam | PF25895 |
WHD_plant_disease | Domain | 652 | 763 | 2.3e-41 | 141.1 | Winged Helix Domain in plant disease resistance proteins |
XP_057775847.1 |
Pfam | PF13676 |
TIR_2 | Domain | 152 | 230 | 1.8e-07 | 32.4 | TIR domain |
XP_057775847.1 |
Pfam | PF00931 |
NB-ARC | Domain | 416 | 568 | 2.1e-05 | 24.8 | NB-ARC domain |
XP_057775847.1 |
Pfam | PF25895 |
WHD_plant_disease | Domain | 652 | 763 | 2.3e-41 | 141.1 | Winged Helix Domain in plant disease resistance proteins |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。