当前解析结果
SmilChr07G004177| 统一新 Gene ID | SmilChr07G004177 |
|---|---|
| 名称 | SmilChr07G004177 |
| 描述 | putative late blight resistance protein homolog R1A-4 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 53723650 - 53726623 / - |
| NCBI Gene ID | LOC130994806 |
|---|---|
| GeneID | 130994806 |
| locus_tag | - |
| NCBI Name | LOC130994806 |
| 原始查询 | SmilChr07G004177 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-4 |
| 产物 | putative late blight resistance protein homolog R1A-4 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=28.3; qcov=0.785; evalue=9.19e-56; confidence=low |
| Rice | Os11g0633500- identity=35.6; qcov=0.45; evalue=7.83e-68; confidence=medium |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13401 (AAA_22); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994806 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057775855.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057775855.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057775855.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775855.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775855.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:53723802 |
TC |
T |
1bp_deletion | frameshift_variant | 91 | A10,A11,A13,A16,A18,A2,A21,A22,A24,A3,A8,B101,B102,B104,B107,B108,B11,B111,B114,B117,B120,B126,B128,B13,B130,B135,B137,B16,B2,B20,B23,B26,B35,B37,B38,B39,B4,B42,B43,B44,B53,B60,B61,B62,B67,B69,B71,B72,B73,B75,B8,B81,B87,B94,B98,B99,C12,C15,C19,C24,C27,C28,C29,C30,C31,C37,C4,C40,C46,C5,C50,C51,C54,C56,C58,C6,C61,C62,C63,C64,C65,C67,C71,C75,C79,C82,C84,C87,D11,D3,D7 |
Chr7:53723804 |
G |
A |
EMS_canonical_SNV | stop_gained | 6 | B11,B120,B17,B70,B9,C46 |
Chr7:53723807 |
TA |
T |
1bp_deletion | frameshift_variant | 91 | A18,A20,A21,A24,A4,B101,B104,B108,B113,B117,B125,B13,B130,B131,B132,B134,B135,B138,B139,B2,B22,B25,B26,B3,B30,B34,B35,B36,B37,B4,B41,B42,B43,B45,B52,B55,B56,B57,B62,B64,B67,B68,B69,B72,B75,B78,B80,B82,B84,B86,B90,B92,B94,B95,B96,B98,B99,C14,C16,C21,C22,C29,C31,C33,C34,C35,C36,C37,C38,C45,C46,C48,C5,C51,C54,C56,C58,C59,C6,C61,C64,C66,C68,C71,C72,C75,C84,C86,C87,D10,D2 |
Chr7:53723883 |
GTC |
G |
2bp_deletion | frameshift_variant | 93 | A10,A11,A13,A15,A18,A2,A21,A24,A3,A5,A8,B104,B108,B11,B111,B114,B117,B120,B126,B13,B130,B132,B135,B138,B139,B140,B16,B2,B20,B22,B23,B26,B35,B37,B38,B39,B4,B42,B43,B44,B49,B53,B55,B56,B57,B60,B62,B66,B67,B69,B71,B72,B73,B75,B79,B8,B81,B89,B90,B92,B94,B96,B98,C12,C19,C21,C28,C29,C30,C31,C39,C4,C43,C5,C51,C54,C58,C61,C62,C63,C64,C67,C7,C71,C72,C75,C79,C82,C83,C84,C87,D11,D3 |
Chr7:53723961 |
CAT |
C |
2bp_deletion | frameshift_variant | 70 | A11,A13,A2,A20,A22,A23,A24,A9,B101,B103,B104,B108,B109,B11,B114,B119,B125,B126,B129,B130,B131,B134,B137,B139,B19,B2,B20,B22,B32,B37,B38,B39,B4,B42,B43,B48,B53,B57,B58,B65,B72,B73,B81,B91,C10,C14,C15,C18,C26,C28,C30,C33,C45,C47,C5,C51,C56,C60,C63,C66,C67,C69,C73,C78,C79,C83,C84,C86,D4,D5 |
Chr7:53723964 |
G |
GCA |
2bp_insertion | frameshift_variant | 36 | A11,A20,A9,B103,B109,B11,B119,B129,B130,B134,B19,B20,B32,B39,B4,B42,B43,B48,B57,B65,B73,B91,C14,C15,C26,C28,C33,C45,C47,C60,C67,C69,C78,C86,D4,D5 |
Chr7:53723990 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr7:53724038 |
C |
T |
EMS_canonical_SNV | stop_gained | 7 | B121,B20,C11,C23,C25,C61,C7 |
Chr7:53724043 |
TA |
* |
1bp_deletion | CDS_variant | 5 | B118,B20,C23,C61,C7 |
Chr7:53724048 |
C |
CAA |
2bp_insertion | frameshift_variant | 6 | B118,B121,B20,C23,C7,C76 |
Chr7:53724050 |
T |
TAG |
2bp_insertion | frameshift_variant | 5 | B121,B20,C11,C23,C7 |
Chr7:53724050 |
T |
TAG |
2bp_insertion | CDS_variant | 5 | B121,B20,C11,C23,C7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775855.1PF00931
NB-ARC 210-370 aa
PF13401
AAA_22 223-320 aa
PF23559
WHD_DRP 460-526 aa
XP_057775856.1PF00931
NB-ARC 210-370 aa
PF13401
AAA_22 223-320 aa
PF23559
WHD_DRP 460-526 aa
XP_057775857.1PF00931
NB-ARC 210-370 aa
PF13401
AAA_22 223-320 aa
PF23559
WHD_DRP 460-526 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775855.1 |
Pfam | PF00931 |
NB-ARC | Domain | 210 | 370 | 1.8e-43 | 148.8 | NB-ARC domain |
XP_057775855.1 |
Pfam | PF13401 |
AAA_22 | Domain | 223 | 320 | 3.8e-07 | 31.2 | AAA domain |
XP_057775855.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 460 | 526 | 5.7e-16 | 59.0 | Disease resistance protein Winged helix domain |
XP_057775856.1 |
Pfam | PF00931 |
NB-ARC | Domain | 210 | 370 | 1.6e-43 | 149.0 | NB-ARC domain |
XP_057775856.1 |
Pfam | PF13401 |
AAA_22 | Domain | 223 | 320 | 3.1e-07 | 31.5 | AAA domain |
XP_057775856.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 460 | 526 | 4.8e-16 | 59.3 | Disease resistance protein Winged helix domain |
XP_057775857.1 |
Pfam | PF00931 |
NB-ARC | Domain | 210 | 370 | 1.5e-43 | 149.1 | NB-ARC domain |
XP_057775857.1 |
Pfam | PF13401 |
AAA_22 | Domain | 223 | 320 | 2.9e-07 | 31.6 | AAA domain |
XP_057775857.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 460 | 526 | 4.6e-16 | 59.3 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。