Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004182`

染色体: Chr07 坐标: 53781664-53784435 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004182`
名称	SmilChr07G004182
描述	putative late blight resistance protein homolog R1B-14
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	53781664 - 53784435 / `-`

ID 对照

NCBI Gene ID	`LOC130994408`
GeneID	`130994408`
locus_tag	`-`
NCBI Name	`LOC130994408`
原始查询	`SmilChr07G004182`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1B-14
产物	putative late blight resistance protein homolog R1B-14
Arabidopsis	`AT3G46530` (RPP13) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=32.6; qcov=0.569; evalue=5.42e-56; confidence=low
Rice	`Os11g0633500` - identity=36.3; qcov=0.397; evalue=5.88e-66; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13173 (AAA_14); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:130994408

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057775433.1`
2	Cytosol	细胞质基质	0.20000	`XP_057775433.1`
3	Nucleus	细胞核	0.00000	`XP_057775433.1`
4	Chromosome	染色体	0.00000	`XP_057775433.1`
5	Centromere	着丝粒	0.00000	`XP_057775433.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:53781665`	`CAA`	`C`	2bp_deletion	frameshift_variant	1	B121
`Chr7:53781665`	`CAA`	`C`	2bp_deletion	CDS_variant	1	B121
`Chr7:53781666`	`A`	`AT`	1bp_insertion	frameshift_variant	101	A1,A13,A14,A15,A16,A21,A22,A3,A4,A5,A6,A7,A8,B1,B101,B102,B103,B104,B105,B106,B110,B111,B117,B118,B120,B124,B129,B130,B131,B132,B133,B139,B14,B21,B24,B28,B3,B34,B35,B45,B47,B50,B56,B6,B60,B61,B66,B69,B71,B74,B76,B78,B81,B82,B88,B9,B90,B92,B93,B96,B97,C10,C21,C25,C26,C28,C3,C30,C35,C38,C4,C43,C48,C5,C51,C52,C56,C57,C59,C63,C64,C66,C67,C7,C72,C76,C77,C78,C8,C80,C83,C85,C87,C9,D1,D10,D11,D2,D3,D5,D9
`Chr7:53781669`	`T`	`TCA`	2bp_insertion	frameshift_variant	102	A1,A13,A14,A15,A16,A22,A3,A4,A5,A6,A7,A8,B1,B101,B102,B103,B104,B105,B106,B110,B111,B117,B118,B120,B124,B129,B130,B131,B132,B133,B139,B14,B21,B24,B28,B3,B34,B35,B45,B47,B50,B54,B56,B6,B60,B61,B66,B69,B71,B74,B76,B78,B81,B82,B88,B9,B90,B92,B93,B96,B97,C10,C21,C25,C26,C28,C3,C30,C35,C38,C4,C43,C48,C5,C51,C52,C56,C57,C59,C63,C64,C66,C67,C7,C72,C76,C77,C78,C8,C80,C82,C83,C85,C87,C9,D1,D10,D11,D2,D3,D5,D9
`Chr7:53781672`	`A`	`AT`	1bp_insertion	frameshift_variant	102	A1,A13,A14,A15,A16,A22,A3,A4,A5,A6,A7,A8,B1,B101,B102,B103,B104,B105,B106,B110,B111,B117,B118,B120,B124,B130,B131,B132,B133,B139,B14,B21,B24,B28,B3,B34,B35,B45,B50,B53,B54,B56,B6,B60,B61,B66,B69,B71,B74,B76,B78,B81,B82,B88,B9,B90,B92,B93,B96,B97,C10,C21,C25,C26,C28,C3,C30,C35,C38,C4,C41,C43,C48,C5,C51,C52,C56,C57,C59,C63,C64,C66,C67,C7,C72,C76,C77,C78,C8,C80,C82,C83,C85,C87,C9,D1,D10,D11,D2,D3,D5,D9
`Chr7:53781690`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr7:53781740`	`TA`	`T`	1bp_deletion	frameshift_variant	3	A1,B123,C51
`Chr7:53781740`	`TA`	`T`	1bp_deletion	CDS_variant	3	A1,B123,C51
`Chr7:53781746`	`TC`	`T`	1bp_deletion	frameshift_variant	2	A1,C51
`Chr7:53781746`	`TC`	`T`	1bp_deletion	CDS_variant	2	A1,C51
`Chr7:53781751`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A1,B93,C51
`Chr7:53781790`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B123,B93

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775433.1

923 aa

462

923

NB-ARC

AAA_14

WHD_DRP

LRR_14

PF00931 NB-ARC 200-360 aa PF13173 AAA_14 212-322 aa PF23559 WHD_DRP 452-516 aa PF23598 LRR_14 573-877 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775433.1`	Pfam	`PF00931`	NB-ARC	Domain	200	360	1.5e-43	149.1	NB-ARC domain
`XP_057775433.1`	Pfam	`PF13173`	AAA_14	Family	212	322	1e-06	29.5	AAA domain
`XP_057775433.1`	Pfam	`PF23559`	WHD_DRP	Domain	452	516	8.7e-18	64.9	Disease resistance protein Winged helix domain
`XP_057775433.1`	Pfam	`PF23598`	LRR_14	Repeat	573	877	1.3e-11	44.6	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919450.1
ATGGCAGCTTATGCAGCTCTCGCTTCTCTCTTGAATACCATTCAGCAGATGATGACCCATCCTACCCTTTCCACTTCTTTCCACAACATTCAGATCCAATCTCTTCAGGAGAAGGCTACTTTGTTGCTCCATTTCATAGAGACCTATCATTACGGTGGTGGAGTTAGCCAAGAAGCACAACATCTCGAAAGCCAAATCACATCTGCAGCTCATACAGCTGAGGATATGATTGAATCACACATCGTCAATCAACTCCTTCC...

CDS

1 records

下载 CDS FASTA

LOC130994408
ATGGCAGCTTATGCAGCTCTCGCTTCTCTCTTGAATACCATTCAGCAGATGATGACCCATCCTACCCTTTCCACTTCTTTCCACAACATTCAGATCCAATCTCTTCAGGAGAAGGCTACTTTGTTGCTCCATTTCATAGAGACCTATCATTACGGTGGTGGAGTTAGCCAAGAAGCACAACATCTCGAAAGCCAAATCACATCTGCAGCTCATACAGCTGAGGATATGATTGAATCACACATCGTCAATCAACTCCTTCC...

Protein

1 records

下载 Protein FASTA

XP_057775433.1
MAAYAALASLLNTIQQMMTHPTLSTSFHNIQIQSLQEKATLLLHFIETYHYGGGVSQEAQHLESQITSAAHTAEDMIESHIVNQLLPLSAHHREAAFSFSLYLQKKRAIEGENAAAVGDVDQFHGGSNQPIEKPAPHVATGDGCLDYLRQIIEDMDAIIQKANELKEKQRFREEHSIPPLTLTQTREESGMVGFHDELIQLLDELTDQRSNRQIVSIVGMGGMGKTTLAKSIYANQLIIERFDIRVWATVSQQYNAKQIL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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