Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004185`

染色体: Chr07 坐标: 53837752-53841072 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004185`
名称	SmilChr07G004185
描述	indole-3-pyruvate monooxygenase YUCCA2-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	53837752 - 53841072 / `+`

ID 对照

NCBI Gene ID	`LOC130994878`
GeneID	`130994878`
locus_tag	`-`
NCBI Name	`LOC130994878`
原始查询	`SmilChr07G004185`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	indole-3-pyruvate monooxygenase YUCCA2-like
产物	indole-3-pyruvate monooxygenase YUCCA2-like
Arabidopsis	`AT4G13260` (YUC2) Flavin-binding monooxygenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:826956] identity=64.8; qcov=0.966; evalue=0; confidence=high
Rice	`Os01g0732700` (YUCCA3) - identity=58; qcov=1.06; evalue=1.32e-176; confidence=high
GO	GO:0004497 (monooxygenase activity); GO:0009851 (auxin biosynthetic process); GO:0050660 (flavin adenine dinucleotide binding)
KEGG	smil00380 (Tryptophan metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00743 (FMO-like); PF01494 (FAD_binding_3); PF07992 (Pyr_redox_2); PF13434 (Lys_Orn_oxgnase); PF13450 (NAD_binding_8); PF13738 (Pyr_redox_3)
InterPro	-
eggNOG	-
NR	GeneID:130994878

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.40000	`XP_057775978.1`
2	Lipid droplet	脂滴	0.40000	`XP_057775978.1`
3	Cytoplasm	细胞质	0.20000	`XP_057775978.1`
4	Nucleus	细胞核	0.00000	`XP_057775978.1`
5	Chromosome	染色体	0.00000	`XP_057775978.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:53838398`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B132,B33,B37,C75
`Chr7:53838413`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr7:53838565`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr7:53838584`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr7:53838599`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A5,B106,B2,B71,C62
`Chr7:53838602`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr7:53840000`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:53840012`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:53840030`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B82,C31
`Chr7:53840044`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr7:53840928`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B132,B33,B37,C5,C75
`Chr7:53840930`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B56,B64,B96,C11,C69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775978.1

406 aa

203

406

FAD_binding_3

Pyr_redox_2

Pyr_redox_3

NAD_binding_8

FMO-like

Lys_Orn_oxgnase

PF01494 FAD_binding_3 31-60 aa PF07992 Pyr_redox_2 31-221 aa PF13738 Pyr_redox_3 31-223 aa PF13450 NAD_binding_8 32-71 aa PF00743 FMO-like 32-348 aa PF13434 Lys_Orn_oxgnase 96-218 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775978.1`	Pfam	`PF01494`	FAD_binding_3	Domain	31	60	7.6e-07	29.4	FAD binding domain
`XP_057775978.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	31	221	2.5e-13	50.9	Pyridine nucleotide-disulphide oxidoreductase
`XP_057775978.1`	Pfam	`PF13738`	Pyr_redox_3	Family	31	223	9.2e-27	94.8	Pyridine nucleotide-disulphide oxidoreductase
`XP_057775978.1`	Pfam	`PF13450`	NAD_binding_8	Domain	32	71	1e-05	26.4	NAD(P)-binding Rossmann-like domain
`XP_057775978.1`	Pfam	`PF00743`	FMO-like	Family	32	348	6.2e-19	68.6	Flavin-binding monooxygenase-like
`XP_057775978.1`	Pfam	`PF13434`	Lys_Orn_oxgnase	Family	96	218	5.1e-14	52.9	L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919995.1
TCTCTCTATATATATATGTGGGGGGAGGAAGAGTTAGGCTATAAACCCTTTTTTAACTACAAATTACGAATCTATAAATTTTATGTGAAATATGTATGAATTCAAAAATTAAAACTTTTGGCTTGTTATGCGATTCTAACCCAAACCCATATATTCATAAATATCATCTTAAATTTTTGTAATCTAAATGTTAAAAATGATTCTTTATTTATATTTTAAAATAAGTTTTTACCTCTCCGATGAATTGAAAGAAAACGAAA...

CDS

1 records

下载 CDS FASTA

LOC130994878
ATGGACGACGACACCTCGCGAGAAATCGAGTACAAATCCGCCCACGATCCCCACTCCAAACACGCCGACGTCGTCTCGATCCAATCGCCGATCATCGTCGGCGCCGGACCGTCGGGGCTGGCCGCCGCGGTCTGCCTGAAGCTCCGCGGCATCCAATCCCTAATCCTGGAGAGAGAGAGCTGCATCGCCTCGCTGTGGCAGCTCAAAACCTACGACCGCCTCCGCCTCCACATCCCCAAGCGCTACTGCGAGCTGCCGTT...

Protein

1 records

下载 Protein FASTA

XP_057775978.1
MDDDTSREIEYKSAHDPHSKHADVVSIQSPIIVGAGPSGLAAAVCLKLRGIQSLILERESCIASLWQLKTYDRLRLHIPKRYCELPFMRFPPDFPTYPSRRQFVDYLEAYAAAFGIRPAFGQAVASAEFDGARRRWRVRTAAGREYLCPWLVVATGENAEEVVPQIEGMAGFAGAVAHTSEYRSGEGYDGKKVLVVGCGNSGMEVSLDLCNHNAKPSLVVRDKVHILPKEMLGTSTFGLSMWLVRLLPVSFADRVLLAGS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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