当前解析结果
SmilChr07G004199| 统一新 Gene ID | SmilChr07G004199 |
|---|---|
| 名称 | SmilChr07G004199 |
| 描述 | protein NRT1/ PTR FAMILY 1.2-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 54032445 - 54041549 / - |
| NCBI Gene ID | LOC130994843 |
|---|---|
| GeneID | 130994843 |
| locus_tag | - |
| NCBI Name | LOC130994843 |
| 原始查询 | SmilChr07G004199 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein NRT1/ PTR FAMILY 1.2-like |
| 产物 | protein NRT1/ PTR FAMILY 1.2-like |
| Arabidopsis | AT1G52190 (AT1G52190)Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841649] identity=51.6; qcov=0.99; evalue=0; confidence=high |
| Rice | Os01g0761500 (P0460E08.29)- identity=46.2; qcov=1; evalue=1.29e-155; confidence=high |
| GO | GO:0005886 (plasma membrane); GO:0006857 (oligopeptide transport); GO:0022857 (transmembrane transporter activity); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00854 (PTR2); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994843 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057775926.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057775926.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057775926.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057775926.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057775926.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:54035382 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr7:54035385 |
G |
A |
EMS_canonical_SNV | stop_gained | 6 | A23,A25,B103,B123,B86,C7 |
Chr7:54035398 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:54035425 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,C28 |
Chr7:54038317 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A23,B123,B86,C7 |
Chr7:54038430 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,A18,B82,C73 |
Chr7:54038627 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B45,D5 |
Chr7:54038652 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B108,B45,C59 |
Chr7:54038667 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C25,C6 |
Chr7:54038709 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C57,C67,D2,D6 |
Chr7:54038807 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr7:54038880 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A14,B109,B76,C25,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775926.1PF07690
MFS_1 39-506 aa
PF00854
PTR2 94-526 aa
XP_057775927.1PF07690
MFS_1 39-506 aa
PF00854
PTR2 94-526 aa
XP_057775928.1PF07690
MFS_1 39-506 aa
PF00854
PTR2 94-526 aa
XP_057775929.1PF07690
MFS_1 39-506 aa
PF00854
PTR2 94-526 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775926.1 |
Pfam | PF07690 |
MFS_1 | Family | 39 | 506 | 6.3e-14 | 52.4 | Major Facilitator Superfamily |
XP_057775926.1 |
Pfam | PF00854 |
PTR2 | Family | 94 | 526 | 2.9e-70 | 237.9 | POT family |
XP_057775927.1 |
Pfam | PF07690 |
MFS_1 | Family | 39 | 506 | 6.2e-14 | 52.4 | Major Facilitator Superfamily |
XP_057775927.1 |
Pfam | PF00854 |
PTR2 | Family | 94 | 526 | 2.9e-70 | 237.9 | POT family |
XP_057775928.1 |
Pfam | PF07690 |
MFS_1 | Family | 39 | 506 | 5.6e-14 | 52.5 | Major Facilitator Superfamily |
XP_057775928.1 |
Pfam | PF00854 |
PTR2 | Family | 94 | 526 | 2.6e-70 | 238.0 | POT family |
XP_057775929.1 |
Pfam | PF07690 |
MFS_1 | Family | 39 | 506 | 5.6e-14 | 52.5 | Major Facilitator Superfamily |
XP_057775929.1 |
Pfam | PF00854 |
PTR2 | Family | 94 | 526 | 2.6e-70 | 238.0 | POT family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。