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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G004209

染色体: Chr07 坐标: 54266817-54298710 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G004209
名称SmilChr07G004209
描述glutamate receptor 3.2
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向54266817 - 54298710 / +

ID 对照

NCBI Gene IDLOC130994802
GeneID130994802
locus_tag-
NCBI NameLOC130994802
原始查询SmilChr07G004209

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述glutamate receptor 3.2
产物glutamate receptor 3.2
ArabidopsisAT4G35290 (GLUR2)
glutamate receptor 2 [Source:NCBI gene (formerly Entrezgene);Acc:829682]
identity=63; qcov=0.976; evalue=0; confidence=high
RiceOs02g0117500 (OsGLR3.1)
-
identity=54.9; qcov=0.956; evalue=0; confidence=high
GOGO:0004970 (glutamate-gated receptor activity); GO:0005886 (plasma membrane)
KEGG-
PfamPF00060 (Lig_chan); PF00497 (SBP_bac_3); PF01094 (ANF_receptor); PF10613 (Lig_chan-Glu_bd); PF13458 (Peripla_BP_6)
InterPro-
eggNOG-
NRGeneID:130994802

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057775849.1
2 Nucleus 细胞核 0.00000 XP_057775849.1
3 Chromosome 染色体 0.00000 XP_057775849.1
4 Centromere 着丝粒 0.00000 XP_057775849.1
5 Chromatin 染色质 0.00000 XP_057775849.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:54294473 C T EMS_canonical_SNV CDS_variant 2 B56,B96
Chr7:54294669 G A EMS_canonical_SNV CDS_variant 1 B108
Chr7:54295104 G A EMS_canonical_SNV CDS_variant 1 A13
Chr7:54295202 C T EMS_canonical_SNV CDS_variant 5 B136,B139,B76,C31,C45
Chr7:54295221 G A EMS_canonical_SNV CDS_variant 5 A5,B10,B35,B5,C25
Chr7:54295470 T TG 1bp_insertion frameshift_variant 1 D10
Chr7:54295470 T TG 1bp_insertion CDS_variant 1 D10
Chr7:54295490 G A EMS_canonical_SNV CDS_variant 4 B115,B52,B86,C55
Chr7:54295571 C T EMS_canonical_SNV CDS_variant 2 B13,C27
Chr7:54295668 C T EMS_canonical_SNV CDS_variant 1 B66
Chr7:54295710 C T EMS_canonical_SNV CDS_variant 4 B12,B13,B35,B62
Chr7:54295884 C T EMS_canonical_SNV CDS_variant 5 A5,B10,B35,B5,C25

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775849.1
938 aa
N
1
469
938
Peripla_BP_6
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Lig_chan
C
PF13458 Peripla_BP_6 50-336 aa PF01094 ANF_receptor 56-411 aa PF10613 Lig_chan-Glu_bd 490-575 aa PF00497 SBP_bac_3 528-810 aa PF00060 Lig_chan 595-841 aa
XP_057775850.1
927 aa
N
1
464
927
Peripla_BP_6
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Lig_chan
C
PF13458 Peripla_BP_6 39-325 aa PF01094 ANF_receptor 45-400 aa PF10613 Lig_chan-Glu_bd 479-564 aa PF00497 SBP_bac_3 517-799 aa PF00060 Lig_chan 584-830 aa
XP_057775851.1
927 aa
N
1
464
927
Peripla_BP_6
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Lig_chan
C
PF13458 Peripla_BP_6 39-325 aa PF01094 ANF_receptor 45-400 aa PF10613 Lig_chan-Glu_bd 479-564 aa PF00497 SBP_bac_3 517-799 aa PF00060 Lig_chan 584-830 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057775849.1 Pfam PF13458 Peripla_BP_6 Family 50 336 1.2e-12 48.9 Periplasmic binding protein
XP_057775849.1 Pfam PF01094 ANF_receptor Domain 56 411 1.1e-83 281.9 Receptor family ligand binding region
XP_057775849.1 Pfam PF10613 Lig_chan-Glu_bd Domain 490 575 4e-08 34.1 Ligated ion channel L-glutamate- and glycine-binding site
XP_057775849.1 Pfam PF00497 SBP_bac_3 Domain 528 810 1.5e-10 41.7 Bacterial extracellular solute-binding proteins, family 3
XP_057775849.1 Pfam PF00060 Lig_chan Family 595 841 2.4e-37 128.7 Ligand-gated ion channel
XP_057775850.1 Pfam PF13458 Peripla_BP_6 Family 39 325 1.2e-12 48.9 Periplasmic binding protein
XP_057775850.1 Pfam PF01094 ANF_receptor Domain 45 400 1.1e-83 282.0 Receptor family ligand binding region
XP_057775850.1 Pfam PF10613 Lig_chan-Glu_bd Domain 479 564 3.9e-08 34.1 Ligated ion channel L-glutamate- and glycine-binding site
XP_057775850.1 Pfam PF00497 SBP_bac_3 Domain 517 799 1.4e-10 41.7 Bacterial extracellular solute-binding proteins, family 3
XP_057775850.1 Pfam PF00060 Lig_chan Family 584 830 2.4e-37 128.7 Ligand-gated ion channel
XP_057775851.1 Pfam PF13458 Peripla_BP_6 Family 39 325 1.2e-12 48.9 Periplasmic binding protein
XP_057775851.1 Pfam PF01094 ANF_receptor Domain 45 400 1.1e-83 282.0 Receptor family ligand binding region
XP_057775851.1 Pfam PF10613 Lig_chan-Glu_bd Domain 479 564 3.9e-08 34.1 Ligated ion channel L-glutamate- and glycine-binding site
XP_057775851.1 Pfam PF00497 SBP_bac_3 Domain 517 799 1.4e-10 41.7 Bacterial extracellular solute-binding proteins, family 3
XP_057775851.1 Pfam PF00060 Lig_chan Family 584 830 2.4e-37 128.7 Ligand-gated ion channel

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057919866.1
GAATTTCAATTGATTGTGTGGTGGCTCCCCCTATTTTCAAATTCAGTTTTTCTCACCTATCAGACCACGCCGCCTTCGACGAGACGACGTCGCCTCGAGCTCGGCGTCCCTCAGTCAAACCTCTACGTTGCCAGCCACCAGCCCGGCGTTGCTCGCCGCACGCCGGCCGTCTCCGTTCGCTGCTGCTGTGCTCAGATCTGCGGCTGGCTGTCGGCCGGAAGTCGCCGCCTCCGCCGCTGCATCATCCTGAACCGCCGGTG...
XM_057919867.1
TTTAAACCCACCGCCACTGCCACTCTCCAGATTTCTATAGCCACCGCCATTCTGCATGCAGTAACCCAATTCAAGACTCCCAATTAATTAACCCAAGATTGAATACCCACTGCCGTCCCAATCCACAAAATTACACAATCCATAAATTGAGAGAGATGTGAGGCGGCGGCCGTCCGGAACGGCGGCGGTCGCGACGGCGCTCGGATGCGCGCCGCTTGCCAAGGGCTTCACGAGAATGTCAGAAATTGAGAGAGAATGGG...

CDS

3 records

下载 CDS FASTA
LOC130994802
ATGCTTGAGGGGTTTGGTTATATACCAACCAAGATGAATTTGTGGGTGGTGCTTTTATCTCTGCTTTGTATTGGGGGGTTAGCAGAGGAGGATTCAAATACAGATGATATAAATATAGGTGCCATTTTCTCGTTCAATACTATAAATGGGGGAGTATCAAAGATTGGGATGGAGGCTGCTGTTGAAGATGTCAATTCAGACCCCACCATTCTTGGGGGAAGAAAGCTAGTTCTTTCAACTCATGATTCAAATTTCAGTGG...
LOC130994802
ATGAATTTGTGGGTGGTGCTTTTATCTCTGCTTTGTATTGGGGGGTTAGCAGAGGAGGATTCAAATACAGATGATATAAATATAGGTGCCATTTTCTCGTTCAATACTATAAATGGGGGAGTATCAAAGATTGGGATGGAGGCTGCTGTTGAAGATGTCAATTCAGACCCCACCATTCTTGGGGGAAGAAAGCTAGTTCTTTCAACTCATGATTCAAATTTCAGTGGCTTCCTTGGCATAATCGGAGGATTGGAGTATAT...

Protein

3 records

下载 Protein FASTA
XP_057775849.1
MLEGFGYIPTKMNLWVVLLSLLCIGGLAEEDSNTDDINIGAIFSFNTINGGVSKIGMEAAVEDVNSDPTILGGRKLVLSTHDSNFSGFLGIIGGLEYMETNKVAIIGPQTSGMAHILSHLANELHVPMLSFTALDPSLSSLQYPYFIQTAPNDLFQMTAIADMISYFGYREVVTIYTDDEQSRGSIIALGDRLAERRCKISYKAVLPPEALATRREIRDALVEVSVMESRVIVVHSYSVIGLQVFELAYKLGMMEKGYVW...
XP_057775850.1
MNLWVVLLSLLCIGGLAEEDSNTDDINIGAIFSFNTINGGVSKIGMEAAVEDVNSDPTILGGRKLVLSTHDSNFSGFLGIIGGLEYMETNKVAIIGPQTSGMAHILSHLANELHVPMLSFTALDPSLSSLQYPYFIQTAPNDLFQMTAIADMISYFGYREVVTIYTDDEQSRGSIIALGDRLAERRCKISYKAVLPPEALATRREIRDALVEVSVMESRVIVVHSYSVIGLQVFELAYKLGMMEKGYVWIATAWLSTVLD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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